Consider alternative clustering algorithms

epigen / unsupervised_analysis

A general purpose Snakemake workflow to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

MIT License

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Consider alternative clustering algorithms #13

Open sreichl opened 1 year ago

sreichl commented 1 year ago

graph based alternatives

Infomap, but literature claims: Leiden>Louvain>Infomap → Leiden
Spectral clustering
- https://towardsdatascience.com/spectral-clustering-aba2640c0d5b
- https://en.wikipedia.org/wiki/Spectral_clustering