Issue 14: Fitting delay estimates using primarycensoreddist

epinowcast / primarycensored

Primary event censored distributions in R and Stan.

https://primarycensored.epinowcast.org/

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Issue 14: Fitting delay estimates using primarycensoreddist #33

Closed seabbs closed 1 month ago

seabbs commented 1 month ago

Description

This PR closes #14. Whilst the model proposed here has some numerical instability issues this shows a proof of concept and performance will be refined in follow up work

Checklist

[x] My PR is based on a package issue and I have explicitly linked it.
[x] I have included the target issue or issues in the PR title in the for Issue(s) issue-numbers: PR title
[x] I have read the contribution guidelines.
[x] I have tested my changes locally.
[x] I have added or updated unit tests where necessary.
[x] I have updated the documentation if required.
[x] My code follows the established coding standards.
[x] I have added a news item linked to this PR.
[x] I have reviewed CI checks for this PR and addressed them as far as I am able.

codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 99.48%. Comparing base (a088846) to head (325916d). Report is 1 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #33 +/- ## ======================================= Coverage 99.48% 99.48% ======================================= Files 6 6 Lines 194 194 ======================================= Hits 193 193 Misses 1 1 ```

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