Semi-parametric SIR

[emvolz]

Models where d/dt S prop to beta(t) S I and log(beta(t)) ~ stochastic process such as Brownian motion or Gaussian process

Ref's

• https://doi.org/10.1016/j.epidem.2016.11.003
• https://doi.org/10.1016/j.epidem.2017.02.009
• https://doi.org/10.1093/biostatistics/kxw011
• https://doi.org/10.1093/biostatistics/kxs052

[sdwfrost]

Hi @emvolz - in R, I presume?

[emvolz]

I made a prototype in Julia: https://kitchen.epirecip.es/user/emvolz/notebooks/work/Semi-parametric%20SIR.ipynb

Tomorrow I will whip up an R version using SDE simulators in pomp