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epirecipes / sir-julia

Various implementations of the classical SIR model in Julia
MIT License
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Add final size calculations #85

Open sdwfrost opened 1 year ago

sdwfrost commented 1 year ago

@slwu89 had already implemented the final size of a stochastic SIR using Sellke's construction. It would be nice to have final sizes for a variety of different implementations. This could also be another illustration of DiffEqCallbacks.jl. I'm not sure whether to put each in their own existing workbook (which would probably be the easiest to maintain) or to collate final sizes into a single notebook.

Papers of interest:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3506030/ https://royalsocietypublishing.org/doi/full/10.1098/rspa.2012.0436

slwu89 commented 1 year ago

Haven't looked at what algorithms are implemented yet, but this new R package may be of interest https://epiverse-trace.github.io/finalsize/

sdwfrost commented 1 year ago

Thanks Sean! I'd already seen Joel's paper, but I didn't know about the R package. I just added a multigroup SIR model, and I have a working finite state projection example too.