epiverse-trace / epichains

[Under active development] Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
https://epiverse-trace.github.io/epichains/
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Rename `ntrees` argument to `index_cases` to clarify meaning #187

Closed jamesmbaazam closed 7 months ago

jamesmbaazam commented 7 months ago

This PR renames the ntrees argument to index_cases to help clarify the review comment in #158. The PR closes #158 and closes #186.

codecov-commenter commented 7 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (9285cb0) 99.41% compared to head (11fd842) 99.41%.

:exclamation: Current head 11fd842 differs from pull request most recent head 4d17f88. Consider uploading reports for the commit 4d17f88 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #187 +/- ## ======================================= Coverage 99.41% 99.41% ======================================= Files 8 8 Lines 517 517 ======================================= Hits 514 514 Misses 3 3 ```

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