epiverse-trace / epichains

Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
https://epiverse-trace.github.io/epichains/
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Rename `<epichains_tree>` class to `<epichains>` #218

Closed jamesmbaazam closed 7 months ago

jamesmbaazam commented 7 months ago

This PR closes #185.

Feature.

The current S3 class for the object returned by simulate_chains() is called <epichains_tree>. This name was chosen to be descriptive of the tree structure of the object but has been deemed redundant.

The class is now renamed to <epichains>

Not applicable.

codecov-commenter commented 7 months ago

Codecov Report

Attention: Patch coverage is 91.66667% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 98.78%. Comparing base (3c03275) to head (19d290f). Report is 5 commits behind head on main.

:exclamation: Current head 19d290f differs from pull request most recent head bd4407f. Consider uploading reports for the commit bd4407f to get more accurate results

Files Patch % Lines
R/epichains.R 90.90% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #218 +/- ## ======================================= Coverage 98.78% 98.78% ======================================= Files 8 8 Lines 574 574 ======================================= Hits 567 567 Misses 7 7 ```

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