epiverse-trace / epichains

Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models
https://epiverse-trace.github.io/epichains/
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Rename files with `.r` extension to `.R` #253

Closed jamesmbaazam closed 6 months ago

jamesmbaazam commented 6 months ago

This PR addresses the spring cleaning checklist in #156 by renaming all R scripts with .r extension to .R to standardize the extensions. The differences in extensions was a remnant of legacy scripts.

Achieving this on git was quite tricky so I'll document it here for future sake.

The issue was that git was not recognising the renamed files even though I changed my configuration to git config core.ignorecase false. I used R's rename.files() first but that did not work.

Here's what worked: