Closed pratikunterwegs closed 10 months ago
Hi @adamkucharski - I've drafted this PR from your branch on $R_0$ uncertainty, are you happy for me to get it passing checks and merge it, or would you like to continue developing it? No rush either way.
Thanks. One thing that would be useful to add is a plot of outcomes in the final section of the vignette, e.g. showing the trajectories of cases from the output_samples
array across different sampled R0 values (didn't have time on the day to find neatest way of wrangling into ggplot!)
Thanks. One thing that would be useful to add is a plot of outcomes in the final section of the vignette, e.g. showing the trajectories of cases from the
output_samples
array across different sampled R0 values (didn't have time on the day to find neatest way of wrangling into ggplot!)
Thanks, can definitely do! Will tag you again once it's complete.
This pull request:
(cc @Bisaloo for workflow monitoring)
This pull request:
(cc @Bisaloo for workflow monitoring)
This pull request:
(cc @Bisaloo for workflow monitoring)
This is looking very nice – good starting example that should open doors for a lot of useful scenario analysis work. Only a couple of minor comments.
Great, thanks for the feedback, merging this now.
This PR is related to #20 and adds a vignette initially authored by @adamkucharski showing how to use {EpiEstim} to generate an $R$ estimate, and how to run multiple iterations of
epidemic_default_*()
for different $R$ values.This PR is scheduled be merged after #128.