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epiverse-trace / episoap

[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates
https://epiverse-trace.github.io/episoap/
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replace `EpiNow2::dist_spec()` with `EpiNow2::pmf()` when appropriate #131

Closed avallecam closed 1 month ago

avallecam commented 4 months ago

This is a reminder to suggest that after https://github.com/epiforecasts/EpiNow2/pull/504 gets merged, line 17 could be updated following the chunk below:

https://github.com/epiverse-trace/episoap/blob/8f2d861d52391333e600a09f0a86d04dec230968/inst/rmarkdown/templates/transmissibility/skeleton/rmdchunks/EpiNow2.Rmd#L16-L18

 generation_time <-  generation_time_opts( 
   EpiNow2::pmf(si$prob_dist$d(si_x))
 )

This came after some exploration shared in #130

CarmenTamayo commented 4 months ago

thanks @avallecam for the heads up!