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epiverse-trace / episoap

[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates
https://epiverse-trace.github.io/episoap/
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ggplot wrapper function that provide their own theme() instructions do not use our default theme #150

Open Bisaloo opened 2 months ago

Bisaloo commented 2 months ago

e.g., plot.incidence() in

https://github.com/epiverse-trace/episoap/blob/0c525bdeaebc460f7c560dd47f5974434024dd4d/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd#L341-L343

We need to re-specify the theme here.

It probably affects some chunks in the EpiNow child document as well.