Adding estimations of R from r - Githubissues

epiverse-trace / episoap

[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates

https://epiverse-trace.github.io/episoap/

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Adding estimations of R from r #23

Closed thibautjombart closed 2 years ago

thibautjombart commented 2 years ago

Aims to close https://github.com/epiverse-trace/data_pipelines/issues/22

Overview of changes made

added a section on estimating R from r including explanations and results
added a reference in the bibliography for Wallinga and Lipstich's method
fixed a mistake on SI plot: should start at 1 day, not 0