Add missing packages to renv

joshwlambert commented 1 year ago

This PR closes #90.

I have added the packages used in the transmissibility rmd documents as well as {episoap} to the renv::use() call in the skeleton document.

Bisaloo commented 1 year ago

The proper fix seems to be using grateful::cite_packages(output = "paragraph", out.dir = ".", pkgs = "Session") to only cite packages actually loaded in the session.

joshwlambert commented 1 year ago

@Bisaloo thanks for the fix. I've tested it and it seems to work well. I've made the update in the last commit.

codecov-commenter commented 1 year ago

Codecov Report

Merging #92 (f8b894a) into main (a913d79) will not change coverage. The diff coverage is n/a.

:exclamation: Current head f8b894a differs from pull request most recent head a676ae1. Consider uploading reports for the commit a676ae1 to get more accurate results

@@           Coverage Diff           @@
##             main      #92   +/-   ##
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  Coverage   73.91%   73.91%           
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  Files           4        4           
  Lines          23       23           
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  Hits           17       17           
  Misses          6        6

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Bisaloo commented 1 year ago

Thanks!

epiverse-trace / episoap

Add missing packages to renv #92

Codecov Report