Fix Reff LaTeX formatting

epiverse-trace / finalsize

R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

https://epiverse-trace.github.io/finalsize/

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Fix Reff LaTeX formatting #179

Closed Bisaloo closed 1 year ago

Bisaloo commented 1 year ago

Please check if the PR fulfills these requirements
[x] I have read the CONTRIBUTING guidelines
[ ] A new item has been added to NEWS.md
[ ] Tests for the changes have been added (for bug fixes / features)
[x] Docs have been added / updated (for bug fixes / features)
What kind of change does this PR introduce? (Bug fix, feature, docs update, ...)

This fixes the LaTeX / mathjax formatting of Reff.

What is the current behavior? (You can also link to an open issue here)

https://epiverse-trace.github.io/finalsize/reference/r_eff.html

github-actions[bot] commented 1 year ago

This pull request:

Adds 14 new dependencies (direct and indirect)
Adds 5 new system dependencies
Removes 0 existing dependencies (direct and indirect)
Removes 0 existing system dependencies

(cc @Bisaloo for workflow monitoring)

pratikunterwegs commented 1 year ago

Thanks @Bisaloo, please feel free to rebase and merge as convenient. Locally, I was able to resolve the linter warning by moving instances of 1e-6 to the line above.

"Error: contact matrix must have a maximum real eigenvalue of 1.0" =
      abs(max(Re(eigen(
        contact_matrix * demography_vector,
        only.values = TRUE
      )$values) - 1.0)) < 1e-6

github-actions[bot] commented 1 year ago

This pull request:

Adds 14 new dependencies (direct and indirect)
Adds 5 new system dependencies
Removes 0 existing dependencies (direct and indirect)
Removes 0 existing system dependencies

(cc @Bisaloo for workflow monitoring)