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epiverse-trace / serofoi

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
https://epiverse-trace.github.io/serofoi/
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Simplify fit_seromodel() output and related refactorizations #109

Closed ntorresd closed 1 year ago

ntorresd commented 1 year ago

This PR fixes #104 and implements a first simplification of fit_seromodel()'s output (see #89). This PR should be merged after #107

codecov-commenter commented 1 year ago

Codecov Report

Merging #109 (82197bc) into main (d7f66d7) will increase coverage by 0.40%. The diff coverage is 95.65%.

:exclamation: Current head 82197bc differs from pull request most recent head 034e63e. Consider uploading reports for the commit 034e63e to get more accurate results

@@            Coverage Diff             @@
##             main     #109      +/-   ##
==========================================
+ Coverage   82.18%   82.59%   +0.40%     
==========================================
  Files          10       10              
  Lines        1684     1660      -24     
==========================================
- Hits         1384     1371      -13     
+ Misses        300      289      -11
Files Changed Coverage Δ
R/seroprevalence_data.R 100.00% <ø> (ø)
R/modelling.R 90.68% <93.75%> (+4.66%) :arrow_up:
R/model_comparison.R 83.33% <100.00%> (ø)
R/visualisation.R 56.34% <100.00%> (+0.22%) :arrow_up:

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