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epiverse-trace / serofoi

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
https://epiverse-trace.github.io/serofoi/
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Apply Epiverse-TRACE standard for linting #137

Closed Bisaloo closed 9 months ago

Bisaloo commented 10 months ago

As always, I recommend going through this PR commit by commit as each one of them focuses on a specific linting issue.

codecov-commenter commented 9 months ago

Codecov Report

Attention: 178 lines in your changes are missing coverage. Please review.

Comparison is base (4a25b10) 76.77% compared to head (dc83edb) 76.25%.

:exclamation: Current head dc83edb differs from pull request most recent head 4f9f812. Consider uploading reports for the commit 4f9f812 to get more accurate results

Files Patch % Lines
R/visualisation.R 0.00% 149 Missing :warning:
R/modelling.R 76.38% 17 Missing :warning:
R/seroprevalence_data.R 85.71% 12 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #137 +/- ## ========================================== - Coverage 76.77% 76.25% -0.53% ========================================== Files 10 10 Lines 1563 1617 +54 ========================================== + Hits 1200 1233 +33 - Misses 363 384 +21 ```

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ntorresd commented 9 months ago

Closes #94 and #102.