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epiverse-trace / serofoi

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
https://epiverse-trace.github.io/serofoi/
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Silent test failure on CI #195

Closed Bisaloo closed 1 week ago

Bisaloo commented 5 months ago

I'm not really sure what this doesn't trigger a failed check but I see the following issue on CI:

  ── Error ('test_issue_47.R:13:3'): issue 47 ────────────────────────────────────
  Error: Error: passing unknown arguments: print_summary.
  Backtrace:
      ▆
   1. └─serofoi::fit_seromodel(...) at test_issue_47.R:13:3
   2.   ├─rstan::sampling(...) at serofoi/R/modelling.R:318:3
   3.   └─rstan::sampling(...) at rstan/R/stanmodel-class.R:47:42
   4.     └─rstan (local) .local(object, ...)
   5.       └─rstan:::is_arg_recognizable(...) at rstan/R/stanmodel-class.R:714:15

  [ FAIL 1 | WARN 18 | SKIP 0 | PASS 44 ]

https://github.com/epiverse-trace/serofoi/actions/runs/9019756147/job/24783323113#step:6:410

ntorresd commented 1 week ago

This test has been deleted. We are restructuring the test infrastructure of the package and increasing test coverage (see #210 and #230 for a summary).