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epiverse-trace / tutorials-late

https://epiverse-trace.github.io/tutorials-late/
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update renv files locally #39

Closed avallecam closed 3 weeks ago

avallecam commented 3 weeks ago

this is to make the project run with R 4.4.0 and the latest packages

to do this we followed steps listed in https://github.com/epiverse-trace/tutorials/issues/75

After update issues to fix:

Fix #40

github-actions[bot] commented 3 weeks ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/epiverse-trace/tutorials-late/compare/md-outputs..md-outputs-PR-39

The following changes were observed in the rendered markdown documents:

 compare-interventions.md                           |   16 +-
 config.yaml (gone)                                 |   83 -
 fig/model-choices-rendered-unnamed-chunk-3-1.png   |  Bin 18391 -> 15163 bytes
 fig/model-choices-rendered-unnamed-chunk-4-1.png   |  Bin 9234 -> 9223 bytes
 ...ing-interventions-rendered-plot_vaccinate-1.png |  Bin 36227 -> 36261 bytes
 fig/simulating-transmission-rendered-traj-1.png    |  Bin 46264 -> 46251 bytes
 md5sum.txt                                         |   28 +-
 model-choices.md                                   |   53 +-
 modelling-interventions.md                         |   34 +-
 renv.lock (gone)                                   | 1796 --------------------
 simulating-transmission.md                         |   60 +-
 11 files changed, 88 insertions(+), 1982 deletions(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-06-11 19:27:13 +0000

avallecam commented 3 weeks ago

From md-outputs, we identified an unexpected change given updates in {epidemics}, filled as an issue in #40 , now fixed in https://github.com/epiverse-trace/tutorials-late/pull/39/commits/c3c3704355964aeca41a1c2d7b23a0a6f720ff62