Open avallecam opened 3 weeks ago
replace output to plot from
filter(compartment == "infectious")
withnew_infections()
to show the incidence curve, which is different to the total number or cumulative amount in the infectious compartment at each time.
instead of replace, show the two use cases:
Evaluate to use
epidemic_size()
to show the end point of each compartment for scenario comparison or refer to package vignette on modelling intervention scenarios into tutorial episode on modelling interventions
The epidemic size:
possibly misunderstanding: the epidemic size does not take from "infectious". The ‘infectious’ compartment increases and decreases with time, so it would be incorrect to say that the epidemic size has decreased, within the time frame of analysis which assumes a constant population.
replace output to plot from
filter(compartment == "infectious")
withnew_infections()
to show the incidence curve, which is different to the total number or cumulative amount in the infectious compartment at each time.Evaluate to use
epidemic_size()
to show the end point of each compartment for scenario comparison or refer to package vignette on modelling intervention scenarios into tutorial episode on modelling interventions