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epiverse-trace
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tutorials-middle
https://epiverse-trace.github.io/tutorials-middle/
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add reminder not to wait until EpiNow2 finish running
#51
avallecam
closed
2 months ago
0
add hexwall figure to setup page
#50
avallecam
closed
2 months ago
0
add `namespace::` reminder
#49
avallecam
closed
1 month ago
0
EpiNow2 needs {rtools}?
#48
avallecam
closed
2 months ago
0
full review post-trial 02
#47
avallecam
closed
2 months ago
2
full tutorial review pre-trial 02 redirected to `main`
#45
avallecam
closed
3 months ago
1
link to {readepi} and {cleanepi} episodes when ready
#44
avallecam
closed
1 month ago
0
integrate `{incidence2}` in data cleaning steps of {EpiNow2} episodes
#43
avallecam
closed
1 month ago
0
evaluate to change challenge on ebola to other dataset?
#42
avallecam
closed
3 months ago
0
clear code highlight in callout heading
#41
avallecam
closed
3 months ago
0
create challenge on estimate and forecast secondary
#40
avallecam
opened
3 months ago
0
add to challenge an observation model or info on `horizon`
#39
avallecam
closed
3 months ago
0
add code that generate the `cases` object
#38
avallecam
closed
3 months ago
0
update quantify-transmissibility with latest edits
#37
avallecam
closed
2 months ago
0
replace {covidregionaldata}
#36
avallecam
closed
3 months ago
0
refactor code to aggregate data using {dplyr}
#35
avallecam
closed
3 months ago
0
full tutorial review pre-trial 02
#34
avallecam
closed
3 months ago
2
full tutorial-middle review pre-trial 02
#33
avallecam
closed
3 months ago
0
move index to setup + update installations
#32
avallecam
closed
3 months ago
1
refer to blogs as explanation documentation
#31
avallecam
opened
3 months ago
0
check if figures are allowed to be used with only attribution
#30
avallecam
opened
3 months ago
0
add serial interval contact tracing figures
#82
avallecam
opened
3 months ago
0
contact tracing practical sheet
#83
avallecam
opened
3 months ago
0
add episodes on estimate superspreading and simulate chains (trial 04)
#29
avallecam
closed
2 months ago
8
add serial interval figure of proportion of backward contacts to `hint`
#84
avallecam
opened
3 months ago
0
hide Rt episode in sync with copy to tutorials-early
#28
avallecam
closed
3 months ago
1
make usage of dplyr consistent in regional rt
#27
avallecam
closed
1 month ago
0
add packages from new episodes (#23)
#26
avallecam
closed
3 months ago
1
fix rt aggregate table
#25
avallecam
closed
3 months ago
1
challenge on HFR assumes all deaths are within a hospital setting
#24
avallecam
closed
3 months ago
6
update setup with incidence2 | cfr, outbreaks, covidregionaldata
#23
avallecam
closed
3 months ago
0
change table order of delay data?
#22
avallecam
closed
3 months ago
0
update index and setup page as in early-task
#21
avallecam
closed
3 months ago
0
redraw reporting delays figure for simple schematic
#85
avallecam
opened
3 months ago
2
redraw figure to use presymptomatic instead of asymptomatic
#86
avallecam
opened
3 months ago
0
estimate superspreading and simulate transmission chains
#20
avallecam
closed
2 months ago
0
`day01` refactor aggregate data step
#19
avallecam
closed
3 months ago
1
isolate linelist from aggregated callout
#18
avallecam
closed
3 months ago
0
`day01` replace generation time figure by epichains PR
#87
avallecam
opened
3 months ago
0
add reference of: using continuous distribution rather than discrete in {cfr}
#17
avallecam
opened
3 months ago
0
add glossary entries on MLE, severity, virulence
#16
avallecam
opened
3 months ago
0
should we move severity heterogeneity challenge to howto?
#15
avallecam
opened
3 months ago
0
create figure or animation to show concept scenario for {cfr}
#14
avallecam
opened
3 months ago
0
soft-update `EpiNow2` in renv.lock for `dist_spec()` output
#13
avallecam
closed
1 month ago
0
update `EpiNow2` with new distribution interface
#12
avallecam
closed
1 month ago
0
check if figures are allowed to be used with only attribution
#88
avallecam
opened
4 months ago
0
Full tutorial review day 01 middle-task
#11
avallecam
closed
3 months ago
1
Specifying key metric names on episode introduction
#10
CarmenTamayo
closed
3 months ago
0
assess to fix the format of the output figure in `severity-static.Rmd`
#9
avallecam
opened
4 months ago
0
remake observed biased confirmed CFR figure
#8
avallecam
opened
4 months ago
0
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