Order in Peptide columns

[GoogleCodeExporter]

What steps will reproduce the problem?
1. In the validation seems like the order of columns do not matter, for example 
when you have a secptra_ref after the assays and study variables the parsers do 
not give any error, but when you try to retrieve the data, it does not provide 
any data. The problem must be related with the the order of the mandatory 
columns.
2.
3.

What is the expected output? What do you see instead?

Please use labels and text to provide additional information.

Original issue reported on code.google.com by ypriverol on 29 Sep 2014 at 2:04

[GoogleCodeExporter]

This issue was updated by revision r585.

As a consequence for supporting the new functionality, getInstance(section) 
will not create the default columns by default anymore. To add the stable 
columns, addStableColumns() needs to be called manually.

E.g.:
MZTabColumnFactory factory = 
MZTabColumnFactory.getInstance(Section.Protein_Header);
factory.addDefaultStableColumns();

Original comment by noedelta on 20 Oct 2014 at 2:18

• Changed state: Fixed