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:white_check_mark::x:Evolutionary protein-protein interface classifier
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Issues with assemblies of ABC transporters #216

Open lafita opened 6 years ago

lafita commented 6 years ago

The assemblies of ABC transporter 4FI3 http://eppic-web.org/ewui/#id/4fi3 seem to be wrong, since assemblies 6,7 and 8 are actually the same one but have different engaged interfaces (7 and 8 should have merged into 6).

Also the structure of the assembly seems wrong, since chain F is positioned completely wrong on the side and clashing with other chains. There must be a translation problem that causes that.

http://eppic-web.org/ewui/ewui/jmolViewer?id=4fi3&type=assembly&input=4fi3&assemblyId=6&coordsFormat=cif&size=644

The same happens with another ABC transporter 2QI9.

josemduarte commented 6 years ago

The second issue (clash in structure of the assembly) might have been fixed with upgrade to biojava 5. Needs testing though.