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epruesse / SINA

SINA - Reference based multiple sequence alignment
https://sina.readthedocs.io
GNU General Public License v3.0
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Search stage not parallelized #32

Closed epruesse closed 5 years ago

epruesse commented 6 years ago

If the search DB and the reference DB are the same, and the engine is PT, the search should use the same PT servers. Otherwise it needs its own.

KasperSkytte commented 5 years ago

Hi!

Thank you for making SINA parallelizable in v1.4.0! Will this be fixed in the near future? Unfortunately, I mostly only use the search stage, so right now I have to brute force by splitting the input, run SINA in parallel processes using GNU parallel, and then combine.

-Kasper

epruesse commented 5 years ago

I don't know yet. I'm working on an internal search engine hopefully obviating the need for the ARB PT server.

KasperSkytte commented 5 years ago

Alright, great. I imagine that would take some time. Thanks