Limit max memory - Githubissues

epruesse / SINA

SINA - Reference based multiple sequence alignment

https://sina.readthedocs.io

GNU General Public License v3.0

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Limit max memory #87

Open epruesse opened 4 years ago

epruesse commented 4 years ago

With large reference databases, the reference sequence cache can grow over time to lead to a late crash during execution. Allow specifying --max-mem.

Make sequence cache an LRU cache
Compute total mem usage:
- index
- cache
- matrix
- rest
Limit threads?

epruesse commented 4 years ago

Would fix the problem reported in #74