Closed sweettyler closed 4 years ago
JesperDramsch
commented
4 years ago I'm currently trying to reproduce the error. Could you share some additional information, as I don't have access to the report system.
So far I'm not able to reproduce any installation error with the information you provided.
sweettyler
commented
4 years ago @JesperDramsch Thank you for the quick response. I'll have a fresh installation of Anaconda 2020.02 and then try to reproduce the error. I'll give you the info ASAP.
sweettyler
commented
4 years ago [pzha@h050017 machineLearning]$ conda install -c conda-forge segyio Collecting package metadata (current_repodata.json): failed
Traceback (most recent call last):
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1079, in __call__
return func(*args, **kwargs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/cli/main.py", line 84, in _main
exit_code = do_call(args, p)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/cli/conda_argparse.py", line 82, in do_call
return getattr(module, func_name)(args, parser)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/cli/main_install.py", line 20, in execute
install(args, parser, 'install')
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/cli/install.py", line 265, in install
should_retry_solve=(_should_retry_unfrozen or repodata_fn != repodata_fns[-1]),
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 117, in solve_for_transaction
should_retry_solve)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 158, in solve_for_diff
force_remove, should_retry_solve)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 262, in solve_final_state
ssc = self._collect_all_metadata(ssc)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 415, in _collect_all_metadata
index, r = self._prepare(prepared_specs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 1011, in _prepare
self.subdirs, prepared_specs, self._repodata_fn)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/index.py", line 228, in get_reduced_index
repodata_fn=repodata_fn)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 105, in query_all
result = tuple(concat(executor.map(subdir_query, channel_urls)))
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/concurrent/futures/_base.py", line 598, in result_iterator
yield fs.pop().result()
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/concurrent/futures/_base.py", line 435, in result
return self.__get_result()
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/concurrent/futures/_base.py", line 384, in __get_result
raise self._exception
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/concurrent/futures/thread.py", line 57, in run
result = self.fn(*self.args, **self.kwargs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 98, in <lambda>
package_ref_or_match_spec))
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 110, in query
self.load()
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 174, in load
_internal_state = self._load()
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 248, in _load
repodata_fn=self.repodata_fn)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/conda/core/subdir_data.py", line 485, in fetch_repodata_remote_request
timeout=timeout)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/requests/sessions.py", line 546, in get
return self.request('GET', url, **kwargs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/requests/sessions.py", line 533, in request
resp = self.send(prep, **send_kwargs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/requests/sessions.py", line 646, in send
r = adapter.send(request, **kwargs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/requests/adapters.py", line 412, in send
conn = self.get_connection(request.url, proxies)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/requests/adapters.py", line 309, in get_connection
proxy_manager = self.proxy_manager_for(proxy)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/requests/adapters.py", line 199, in proxy_manager_for
**proxy_kwargs)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/urllib3/poolmanager.py", line 470, in proxy_from_url
return ProxyManager(proxy_url=url, **kw)
File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/urllib3/poolmanager.py", line 420, in __init__
raise ProxySchemeUnknown(proxy.scheme)
urllib3.exceptions.ProxySchemeUnknown: Not supported proxy scheme None$ /NFS/ud1/home1/pzha/anaconda3/bin/conda install -c conda-forge segyio
environment variables:
CIO_TEST=
active environment : None
user config file : /NFS/ud1/home1/pzha/.condarcpopulated config files : conda version : 4.8.2 conda-build version : 3.18.11 python version : 3.7.6.final.0 virtual packages : cuda=10.2 glibc=2.17 base environment : /NFS/ud1/home1/pzha/anaconda3 (writable) channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /NFS/ud1/home1/pzha/anaconda3/pkgs /NFS/ud1/home1/pzha/.conda/pkgs envs directories : /NFS/ud1/home1/pzha/anaconda3/envs /NFS/ud1/home1/pzha/.conda/envs platform : linux-64 user-agent : conda/4.8.2 requests/2.22.0 CPython/3.7.6 Linux/3.10.0-693.17.1.el7.x86_64 centos/7.4.1708 glibc/2.17 UID:GID : 26491:26491 netrc file : None offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If submitted, this report will be used by core maintainers to improve future releases of conda. Would you like conda to send this report to the core maintainers?
Upload did not complete.
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$ conda config --set report_errors trueabove is the error message. Before installing segyio, I did the following to freshly install Anaconda 2020.02: 1) rm -rf ~/.anaconda 2) rm -rf ~/.conda 3) rm -rf ~/.condarc 4) rm -rf ~/anaconda3 5) ./Anaconda3-2020.02-Linux-x86_64.sh
jokva
commented
4 years ago File "/NFS/ud1/home1/pzha/anaconda3/lib/python3.7/site-packages/urllib3/poolmanager.py", line 420, in __init__
raise ProxySchemeUnknown(proxy.scheme)
urllib3.exceptions.ProxySchemeUnknown: Not supported proxy scheme NoneLooks like there's nothing wrong with the package, but with your network settings. Do other packages work?
JesperDramsch
commented
4 years ago Your environment variables for proxies are set but not filled. This leads to uncaught exceptions in Python 3.7.6 and as far as I'm aware they're working on a fix.
This is not an issue with segyio but with conda or rather Python itself having hicc-ups with your system configuration. Is there a reason to have those env variables exist without values?
It's possible this is the reason, why the report uploads to the conda system also failed, because they supposedly also rely on the proxy settings.
sweettyler
commented
4 years ago I agree there must be something wrong, but probably not what you have pointed out.
I also tried many times that I freshly installed Anaconda 2019.10 first and then installed segyio - in this case I had no problem at all. From my point of view, the environment were same and I exactly repeated the same procedure of installation (please refer the list of commands in my previous post).
I am not sure if you tried to reproduce the issue on your own computer, did you succeed?
Thank you for your time.
sweettyler
commented
4 years ago I saw the last code update of segyio was 5 months ago. Anaconda 2020.02 was release in April 2020. I think maybe segyio need to make some changes to adapt to the new Anaconda.
sweettyler
commented
4 years ago [pzha@h050017 machineLearning]$ conda install -c conda-forge segyio Collecting package metadata (current_repodata.json): done Solving environment: done
==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3
Please update conda by running
$ conda update -n base -c defaults condaenvironment location: /NFS/ud1/home1/pzha/anaconda3
added / updated specs:
The following packages will be downloaded:
package | build
---------------------------|-----------------
conda-4.8.3 | py37hc8dfbb8_1 3.0 MB conda-forge
python_abi-3.7 | 1_cp37m 4 KB conda-forge
segyio-1.9.0 | py37hb3f55d8_0 140 KB conda-forge
------------------------------------------------------------
Total: 3.2 MBThe following NEW packages will be INSTALLED:
python_abi conda-forge/linux-64::python_abi-3.7-1_cp37m segyio conda-forge/linux-64::segyio-1.9.0-py37hb3f55d8_0
The following packages will be UPDATED:
conda pkgs/main::conda-4.7.12-py37_0 --> conda-forge::conda-4.8.3-py37hc8dfbb8_1
Proceed ([y]/n)? y
Downloading and Extracting Packages segyio-1.9.0 | 140 KB | ##################################################################### | 100% conda-4.8.3 | 3.0 MB | ##################################################################### | 100% python_abi-3.7 | 4 KB | ##################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done [pzha@h050017 machineLearning]$
jokva
commented
4 years ago In your first outputs, you don't even get to the point where you're fetching segyio. I don't believe this is an issue with the package (and Jesper was unable to reproduce), but rather with the setup of your system.
sweettyler
commented
4 years ago Thank you all for your time and help. Just googled and found it was caused by some changes in Anaconda 2020.02.
jokva
commented
4 years ago Alright, then I'm closing this issue.
"conda install -c conda-forge segyio" doesn't work!
you should have received the error report multiple times via conda's report system.