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erasmus-center-for-biomics / Nimbus

The Nimbus software suite for the analysis of amplicon based NGS data
MIT License
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Compile error #1

Closed ray1919 closed 6 years ago

ray1919 commented 6 years ago

It throught out an error when I compile Nimbus make -C cplusplus/call make[1]: Entering directory '/BASEDIR/Nimbus/cplusplus/call' mkdir -p bin/ g++ build/call.o build/read_provider.o build/alignment_functions.o build/mpileup.o build/aspects.o build/refsequence.o build/main.o build/sample.o build/cigar.o -g -L/usr/lib64 -std=c++0x \ -pthread \ ${HTS_LIB} -lm -lz -lcurl -llzma -lbz2 \ -lboost_program_options \ -o bin/nimbus_call /usr/bin/ld: /BASEDIR/samtools/samtools-1.7/htslib-1.7/libhts.a(hfile_s3.o): undefined reference to symbol 'EVP_sha1@@OPENSSL_1.0.0' //lib/x86_64-linux-gnu/libcrypto.so.1.0.0: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Makefile:17: recipe for target 'caller' failed make[1]: *** [caller] Error 1 make[1]: Leaving directory '/BASEDIR/Nimbus/cplusplus/call' Makefile:19: recipe for target 'call' failed make: *** [call] Error 2 I googled the error and solved the error by adding "-lcrypto" to the command. I don't know whether it is a single case, otherwise you could fix the bug in Makefile.

erasmus-center-for-biomics commented 6 years ago

Dear Ray,

I have heard of the -lcrypto error before. To my knowledge, it only occurs on virtual machines running in the cloud. I can make a specific Makefile for use with cloud instances.

I assume that most people will not have crypto-dev installed on their regular servers.

with kind regards,

Rutger

ray1919 commented 6 years ago

Thank you for your reply.