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Improved Ribo-seq enables identification of cryptic translation events
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Java heap space error #17

Open soniachothani opened 1 year ago

soniachothani commented 1 year ago

Hi,

Thank you very much for this useful tool. I have previously successfully used the tool but recently on a large bam file encountered this error: GC overhead limit exceeded Error: java.lang.OutOfMemoryError: Java heap space Java heap space java.lang.OutOfMemoryError: Java heap space at java.util.LinkedHashMap$LinkedKeySet.iterator(LinkedHashMap.java:543) at gedi.util.userInteraction.progress.ProgressManager.run(ProgressManager.java:101) at java.lang.Thread.run(Thread.java:748) java.lang.RuntimeException: java.lang.OutOfMemoryError: Java heap space at gedi.util.job.schedule.DefaultPetriNetScheduler.run(DefaultPetriNetScheduler.java:223) at gedi.util.program.GediProgram$1.execute(GediProgram.java:375) at gedi.util.program.GediProgram.run(GediProgram.java:210) at executables.Price.main(Price.java:70) Caused by: java.lang.OutOfMemoryError: Java heap space

Do you know how I can fix this?

Many thanks.

Best wishes, Sonia