Closed TamaraO closed 6 years ago
Hi Tamara,
gedi -e Price -h
only tells you about mandatory parameters, try gedi -e Price -hh
!
The -percond
flag makes Price to estimate a codon model for each individual sample instead of a single model for the pooled samples. This should lead to more accurate mapping of reads to codons in most cases, so the pipeline uses that by default.
Florian
Hi Florian,
What does
-percond
flag mean for Price pipeline? It appears when I run multiple samples. What are the alternatives?gedi -t /Ribo-seq/Price -e Price -reads /Ribo-seq/Price/./parameters/parameters.cit -genomic human_g1k_v37 -prefix /Ribo-seq/Price/./parameters/price/parameters -plot -percond -D
It's not in the help
gedi -e Price -h
.Thank you,
Tamara