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ericmjl / Network-Analysis-Made-Simple

An introduction to network analysis and applied graph theory using Python and NetworkX
https://ericmjl.github.io/Network-Analysis-Made-Simple/index.html
MIT License
1.03k stars 401 forks source link

installation error on Mac #325

Open gurdeep101 opened 1 year ago

gurdeep101 commented 1 year ago

I'm getting the below error when installing the package via Conda. Am using MacOS Monterey 12.2.1 on 2017 MacBook Air

ERROR conda.core.link:_execute(740): An error occurred while installing package 'conda-forge::rise-5.7.1-py39h6e9494a_2'. Rolling back transaction: done

LinkError: post-link script failed for package conda-forge::rise-5.7.1-py39h6e9494a_2 location of failed script: /Users/gurdeep_working/miniconda3/envs/nams/bin/.rise-post-link.sh ==> script messages <==

==> script output <== stdout: stderr: Traceback (most recent call last): File "/Users/gurdeep_working/miniconda3/envs/nams/bin/jupyter-nbextension", line 10, in sys.exit(main()) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/jupyter_core/application.py", line 277, in launch_instance return super().launch_instance(argv=argv, **kwargs) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/traitlets/config/application.py", line 1041, in launch_instance app.start() File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/notebook/nbextensions.py", line 972, in start super().start() File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/jupyter_core/application.py", line 266, in start self.subapp.start() File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/notebook/nbextensions.py", line 882, in start self.toggle_nbextension_python(self.extra_args[0]) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/notebook/nbextensions.py", line 855, in toggle_nbextension_python return toggle(module, File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/notebook/nbextensions.py", line 470, in enable_nbextension_python return _set_nbextension_state_python(True, module, user, sys_prefix, File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/notebook/nbextensions.py", line 368, in _set_nbextension_state_python m, nbexts = _get_nbextension_metadata(module) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/notebook/nbextensions.py", line 1107, in _get_nbextension_metadata m = import_item(module) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/traitlets/utils/importstring.py", line 38, in import_item return __import__(parts[0]) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/rise/__init__.py", line 3, in __version__ = pkg_resources.require("rise")[0].version File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/pkg_resources/__init__.py", line 909, in require needed = self.resolve(parse_requirements(requirements)) File "/Users/gurdeep_working/miniconda3/envs/nams/lib/python3.9/site-packages/pkg_resources/__init__.py", line 795, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'webcolors>=1.11; extra == "format-nongpl"' distribution was not found and is required by jsonschema return code: 1 ()
gurdeep101 commented 1 year ago

getting the same error with viscose containers on Mac

0 390.9 ERROR conda.core.link:_execute(733): An error occurred while installing package 'conda-forge::rise-5.7.1-py39hf3d152e_2'.

0 390.9 Rolling back transaction: ...working... done

0 415.2

0 415.2 LinkError: post-link script failed for package conda-forge::rise-5.7.1-py39hf3d152e_2

0 415.2 location of failed script: /opt/conda/bin/.rise-post-link.sh

0 415.2 ==> script messages <==

0 415.2

0 415.2 ==> script output <==

0 415.2 stdout:

0 415.2 stderr: Traceback (most recent call last):

0 415.2 File "/opt/conda/bin/jupyter-nbextension", line 10, in

0 415.2 sys.exit(main())

0 415.2 File "/opt/conda/lib/python3.9/site-packages/jupyter_core/application.py", line 277, in launch_instance

0 415.2 return super().launch_instance(argv=argv, **kwargs)

0 415.2 File "/opt/conda/lib/python3.9/site-packages/traitlets/config/application.py", line 1041, in launch_instance

0 415.2 app.start()

0 415.2 File "/opt/conda/lib/python3.9/site-packages/notebook/nbextensions.py", line 972, in start

0 415.2 super().start()

0 415.2 File "/opt/conda/lib/python3.9/site-packages/jupyter_core/application.py", line 266, in start

0 415.2 self.subapp.start()

0 415.2 File "/opt/conda/lib/python3.9/site-packages/notebook/nbextensions.py", line 882, in start

0 415.2 self.toggle_nbextension_python(self.extra_args[0])

0 415.2 File "/opt/conda/lib/python3.9/site-packages/notebook/nbextensions.py", line 855, in toggle_nbextension_python

0 415.2 return toggle(module,

0 415.2 File "/opt/conda/lib/python3.9/site-packages/notebook/nbextensions.py", line 470, in enable_nbextension_python

0 415.2 return _set_nbextension_state_python(True, module, user, sys_prefix,

0 415.2 File "/opt/conda/lib/python3.9/site-packages/notebook/nbextensions.py", line 368, in _set_nbextension_state_python

0 415.2 m, nbexts = _get_nbextension_metadata(module)

0 415.2 File "/opt/conda/lib/python3.9/site-packages/notebook/nbextensions.py", line 1107, in _get_nbextension_metadata

0 415.2 m = import_item(module)

0 415.2 File "/opt/conda/lib/python3.9/site-packages/traitlets/utils/importstring.py", line 38, in import_item

0 415.2 return import(parts[0])

0 415.2 File "/opt/conda/lib/python3.9/site-packages/rise/init.py", line 3, in

0 415.2 version = pkg_resources.require("rise")[0].version

0 415.2 File "/opt/conda/lib/python3.9/site-packages/pkg_resources/init.py", line 909, in require

0 415.2 needed = self.resolve(parse_requirements(requirements))

0 415.2 File "/opt/conda/lib/python3.9/site-packages/pkg_resources/init.py", line 795, in resolve

0 415.2 raise DistributionNotFound(req, requirers)

0 415.2 pkg_resources.DistributionNotFound: The 'webcolors>=1.11; extra == "format-nongpl"' distribution was not found and is required by jsonschema

0 415.2

0 415.2 return code: 1

0 415.2

0 415.2 ()

0 415.2

ERROR: failed to solve: executor failed running [/bin/sh -c apt-get update && apt-get -y install --no-install-recommends apt-utils dialog 2>&1 && apt-get -y install git openssh-client less iproute2 procps iproute2 lsb-release && /opt/conda/bin/pip install pylint && if [ -f "/tmp/conda-tmp/environment.yml" ]; then /opt/conda/bin/mamba env update -n base -f /tmp/conda-tmp/environment.yml; fi && rm -rf /tmp/conda-tmp && groupadd --gid $USER_GID $USERNAME && useradd -s /bin/bash --uid $USER_UID --gid $USER_GID -m $USERNAME && apt-get install -y sudo && echo $USERNAME ALL=(root) NOPASSWD:ALL > /etc/sudoers.d/$USERNAME && chmod 0440 /etc/sudoers.d/$USERNAME && apt-get install -y nano vim emacs && python -m ipykernel install --user --name "nams" --display-name "Network Analysis Made Simple" && apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* ENV DEBIAN_FRONTEND=dialog]: exit code: 1 [430841 ms] Error: Command failed: docker buildx build --load --build-arg BUILDKIT_INLINE_CACHE=1 -f /var/folders/yg/d0p_k81s2y5_7pp0htgckbnw0000gp/T/devcontainercli/container-features/0.25.2-1672899418820/Dockerfile-with-features -t vsc-network-analysis-made-simple-c51cfef7ed9101e18fde3379e41a52b4 --target dev_containers_target_stage --build-arg _DEV_CONTAINERS_BASE_IMAGE=dev_container_auto_added_stage_label /Users/gurdeep_working/Desktop/Network-Analysis-Made-Simple [430841 ms] at Doe (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:1894:1669) [430841 ms] at process.processTicksAndRejections (node:internal/process/task_queues:96:5) [430841 ms] at async EF (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:1893:1978) [430842 ms] at async uT (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:1893:901) [430842 ms] at async Poe (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:1899:2128) [430842 ms] at async Zf (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:1899:3278) [430842 ms] at async aue (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:2020:15276) [430842 ms] at async oue (/Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js:2020:15030) [430858 ms] Exit code 1 [430874 ms] Command failed: /Applications/Visual Studio Code.app/Contents/Frameworks/Code Helper.app/Contents/MacOS/Code Helper --ms-enable-electron-run-as-node /Users/gurdeep_working/.vscode/extensions/ms-vscode-remote.remote-containers-0.266.1/dist/spec-node/devContainersSpecCLI.js up --user-data-folder /Users/gurdeep_working/Library/Application Support/Code/User/globalStorage/ms-vscode-remote.remote-containers/data --workspace-folder /Users/gurdeep_working/Desktop/Network-Analysis-Made-Simple --workspace-mount-consistency cached --id-label devcontainer.local_folder=/Users/gurdeep_working/Desktop/Network-Analysis-Made-Simple --log-level debug --log-format json --config /Users/gurdeep_working/Desktop/Network-Analysis-Made-Simple/.devcontainer/devcontainer.json --default-user-env-probe loginInteractiveShell --mount type=volume,source=vscode,target=/vscode,external=true --skip-post-create --update-remote-user-uid-default on --mount-workspace-git-root true [430874 ms] Exit code 1