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erictleung
/
shinydiversity
Interactive application to explore various ecological diversity metrics
https://erictleung.shinyapps.io/shinydiversity
GNU General Public License v3.0
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Maybe consider using Shiny-phyloseq instead...
#55
joey711
closed
6 years ago
1
Lack of SampleType in alpha diversity breaks plot
#54
ampatzia
closed
6 years ago
2
Formated beta.Rmd documentation file to be more readable
#53
ampatzia
closed
6 years ago
0
Navigation bar fails when you render README.md
#52
erictleung
closed
6 years ago
1
Remove navigation bar for extra pages
#51
erictleung
closed
6 years ago
0
"alpha diversiTy" spelling in title of page
#50
scatcher125
closed
6 years ago
0
Minor edits to text in README
#49
scatcher125
closed
6 years ago
0
Add beta diversity technical information
#48
erictleung
closed
6 years ago
0
Converting README.md to html --> enable table of contents in Home page
#47
scatcher125
closed
6 years ago
0
Alpha diversity updated
#46
amanji
closed
6 years ago
0
Add tabs in docs -- updated
#45
scatcher125
closed
6 years ago
0
Dropdown menu in docs
#44
scatcher125
closed
6 years ago
1
Fix broken README link
#43
scatcher125
closed
6 years ago
0
Add table of contents for alpha documentation
#42
erictleung
closed
6 years ago
0
Beta
#41
aimirza
closed
6 years ago
0
Add prereqs for local dev
#40
scatcher125
closed
6 years ago
2
Remove Home header and remove extra library call
#39
erictleung
closed
6 years ago
0
Problem in documentation section from function knit
#38
ampatzia
closed
6 years ago
2
Add sliders and READme width
#37
scatcher125
closed
6 years ago
0
Image on homepage should be responsive
#36
erictleung
closed
6 years ago
0
Investigate using ggplot2 heatmap plotting for alpha diversity
#35
erictleung
opened
6 years ago
0
Add start of alpha diversity documentation
#34
erictleung
closed
6 years ago
0
Sparsify
#33
aimirza
closed
6 years ago
0
"Prerequisites for Local Development" in TOC broken
#32
erictleung
closed
6 years ago
0
Layout
#31
aimirza
closed
6 years ago
0
Homepage table of contents doesn't work
#30
erictleung
closed
6 years ago
1
Added ggplot theme options as per issue 23
#29
ampatzia
closed
6 years ago
0
Resize image in README.md for better formatting of home page
#28
scatcher125
closed
6 years ago
1
Add README.md to homepage
#27
scatcher125
closed
6 years ago
0
Layout
#26
amanji
closed
6 years ago
0
Alphadiversitypage
#25
amanji
closed
6 years ago
0
Adds new layout structure for a multi-page Shiny application
#24
amanji
closed
6 years ago
0
Give option to change plotting theme
#23
erictleung
closed
6 years ago
1
Look at using mock community data as use case in application
#22
erictleung
opened
6 years ago
1
Have dynamic plotting when moving sliders
#21
erictleung
opened
6 years ago
0
For simulated data, have slider to change number of taxa
#20
erictleung
opened
6 years ago
0
Simulate simple probability distributions for simulated data
#19
erictleung
opened
6 years ago
0
In simulated data, have way to induce sparsity
#18
erictleung
closed
6 years ago
0
Have slider to filter out taxa based on some criteria
#17
erictleung
opened
6 years ago
0
Display summary of data being plotted
#16
erictleung
opened
6 years ago
0
Create hover over for giving information on what is plotted
#15
erictleung
opened
6 years ago
1
Document what beta diversity metrics are calculating
#14
erictleung
opened
6 years ago
1
Document what alpha diversity metrics are calculating
#13
erictleung
opened
6 years ago
0
Create separate tabs for alpha and beta diversity
#12
erictleung
closed
6 years ago
1
Have option to explore effects normalization/rarifying on data diversity
#11
erictleung
opened
6 years ago
0
Allow user to upload own data to visualize
#10
erictleung
opened
6 years ago
0
Create page/tab on motivations for project
#9
erictleung
opened
6 years ago
0
Look into shinytest for CI
#8
erictleung
opened
6 years ago
2
Use of shinydashboard?
#7
erictleung
opened
6 years ago
0
Find "real" microbiome data to visualize
#6
erictleung
opened
6 years ago
0
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