erikrikarddaniel / magmap

Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
MIT License
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Anvio table #25

Open erikrikarddaniel opened 3 years ago

erikrikarddaniel commented 3 years ago

When called with a GTDB-Tk tree, subset that to found genomes and output a tsv table for Anvio with: taxonomy and overall abundances per sample (idxstats converted to tpms).