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erikrikarddaniel / pfitmap

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Load other databases than RefSeq #4

Closed erikrikarddaniel closed 10 years ago

erikrikarddaniel commented 11 years ago

Instead of depending on the hardcoded "ref" string for database abbreviation and likewise hardcoded URL for taxon set, "calculate" should read the load_databases table and create protein_count rows with attached taxons and proteins for each database to load.

See https://github.com/erikrikarddaniel/pfitmap/issues/73 for a description of the load_database model.

This issue is also dependent on issue https://github.com/erikrikarddaniel/pfitmap/issues/new.

For tests, insert the following into load_databases:

ref current RESTful URL for fully sequenced genomes pdb IMPLIED gb IMPLIED

erikrikarddaniel commented 10 years ago

Will be implemented in new milestone: "Reorganise calculate and load other databases".