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erikrikarddaniel / pfitmap

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Create load_database model #73

Closed erikrikarddaniel closed 10 years ago

erikrikarddaniel commented 10 years ago

The load_database model holds a reference to a sequence_database object and a taxonset. The taxonset is either a URL to a RESTful web service that returns a set of NCBI taxon ids (as json) or the string "IMPLIED" which means the taxon set is to be calculated from the set of organisms encoding proteins that were found among the pfitmap_sequence objects referring to the sequence_database.

erikrikarddaniel commented 10 years ago

Maybe we should have a method in biosql that takes a list of gis and returns a set of unique taxa. For the IMPLIED case.

binnisb commented 10 years ago

Closed since we redesigned load databases and sequence database.