erikrikarddaniel / pfitmap

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Add gis to BioSQL fetch queue if not present #85

Closed erikrikarddaniel closed 10 years ago

erikrikarddaniel commented 10 years ago

Periodically sweep through the DbEntry objects and place gis that are not available from SLLBioSQL to its fetch queue.

binnisb commented 10 years ago
  1. pfitmap scans db_entries for unique gis and compares with gis from sll_biosql.
  2. pfitmap puts gis that exist in db_entries but not in sll_biosql in a queue in sll_biosql
  3. sll_biosql fetches information for all gis that were missing from NCBI (bioruby) and stores the sequences + extra data in database (where and how?)
  4. pfitmap fetches missing db_sequences from sll_biosql and stores the sequence on the db_sequence object
binnisb commented 10 years ago

Not enough to only save db_sequence since additional gis can be added after initial fetch. Add column:

fetched

to db_entry?

erikrikarddaniel commented 10 years ago

Fixed in 674af136882852ec96ad9b00de1ca5f7dda9e95b.