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eringill / chronic_infection_python

A simple GUI that allows users to check whether mutations from a SARS-CoV-2 genome best fit a mutational distribution of genomes derived from global, chronic, or deer infections.
https://eringill.shinyapps.io/covid_mutation_distributions/
MIT License
2 stars 1 forks source link

Examples #3

Closed fionabrinkman closed 2 months ago

fionabrinkman commented 3 months ago

Thanks for sending the app for further testing!

one possible issue: Why when you choose the example deer one, does it not say that it’s a zoonosis sequence as a result? Could we use one that gives such a result?

eringill commented 3 months ago

This is a zoonotic sample. The reason it's not giving the correct result is because the deer mutation distribution that we're comparing it against (from the Feng paper) is incorrect. Sally has contacted them, and they're corresponding with her to get the correct distribution.

fionabrinkman commented 3 months ago

Doh. I thought that had been dealt with - sorry about that.