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erneyramirez / relion_deepEMhancer_extRec

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wrong prefix for non-scipion users #1

Closed azazellochg closed 2 years ago

azazellochg commented 2 years ago

Hi @erneyramirez!

We found that the script fails for non-scipion users because relion files start with run* prefix, not relion* like in Scipion. I suppose the script could account for this by guessing the CONDA_ENV name

https://github.com/erneyramirez/relion_deepEMhancer_extRec/blob/c3bfb61504567b423781ad25a9551462b8a23a04/relion_deepEMhancer_extRec.py#L86

hnndlp commented 2 years ago

can confirm it will run by replacing it with run_ , but there are still a lot of other issues when running relion 4.0 directly

erneyramirez commented 2 years ago

You are both right!. I must modify the script to use it outside of Scipion. I will try to do it as soon as possible. Thank you very much!

erneyramirez commented 2 years ago

I have uploaded some changes and I think it may work for non-scipion users. I will try to keep improving the script. Thank you for your comments