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ersilia-os / chempfn

Ensemble-based, size-agnostic wrapper for the TabPFN classifier
GNU General Public License v3.0
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tqdm install required #38

Closed GemmaTuron closed 6 months ago

GemmaTuron commented 6 months ago

Hi @DhanshreeA !

If I install chempfn using

pip install git+https://github.com/ersilia-os/chempfn.git

and I try to use the AntimicrobialsDataLoader I get the following error

ModuleNotFoundError: No module named 'tqdm'

should we specify tqdm as requirement?

DhanshreeA commented 6 months ago

Hi @GemmaTuron , chempfn has 3 types of dependencies: main dependencies, test, and dev. Within test, we have PyTDC which in turn has tqdm as a dependency. If you install chempfn as pip install ".[test]", assuming you are in the chempfn directory, you should have tqdm in your environment. This is not a good solution though since we now explicitly use tqdm in the evaluate method. I'll add tqdm as an explicit dependency.

GemmaTuron commented 6 months ago

ah makes sense I did not check the [test] installation dependencies sorry Feel free to close the issue when solved

DhanshreeA commented 6 months ago

Solved in e4e0fbe704c4d82f07740eb5e11085151398ef2a