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ersilia-os / eos3b5e

Molecular weight calculation
GNU General Public License v3.0
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New model ready for testing! #15

Open github-actions[bot] opened 1 month ago

github-actions[bot] commented 1 month ago

This model is ready for testing. If you are assigned to this issue, please try it out using the CLI, Google Colab and DockerHub and let us know if it works!

DhanshreeA commented 1 month ago

This model has been built with Ersilia Pack. Worth testing out.

DhanshreeA commented 1 month ago

Also, you'll notice that this issue does not have the updated message, that's because I hadn't pulled in your changes from main before these workflows ran. 🫠

GemmaTuron commented 1 month ago

@DhanshreeA important: this model does not fetch

Status: Downloaded newer image for ersiliaos/eos3b5e:latest
docker.io/ersiliaos/eos3b5e:latest

10:58:40 | DEBUG    | Image pulled succesfully!
10:58:40 | DEBUG    | Size of image 353.2157144546509 MB
10:58:40 | DEBUG    | Registering model eos3b5e in the file system
10:58:40 | DEBUG    | /home/gturon/eos/dest/eos3b5e
10:58:40 | DEBUG    | /home/gturon/eos/dest/eos3b5e/from_dockerhub.json
10:58:40 | DEBUG    | Writing service class pulled_docker /home/gturon/eos/repository/eos3b5e/20240930105840/service_class.txt
10:58:40 | DEBUG    | Writing APIs
10:58:40 | DEBUG    | Using port 49919
10:58:40 | DEBUG    | Starting Docker Daemon service
10:58:40 | DEBUG    | Creating container tmp logs folder /home/gturon/eos/sessions/session_4303/_logs/tmp and mounting as volume in container
10:58:40 | DEBUG    | Stopping all containers related to model eos3b5e
10:58:40 | DEBUG    | Stopping and removing container eos3b5e_bb05
10:58:50 | DEBUG    | Container stopped
10:58:50 | DEBUG    | Container removed
10:58:50 | DEBUG    | Trying to run container
10:58:50 | DEBUG    | Serving container eos3b5e_f838
10:58:50 | DEBUG    | Running container a8d2a532e835aa3737db2bcd6b4f55687391eba2856a0b992aabd646e5b671a1
10:58:50 | DEBUG    | Container in http://0.0.0.0:49919 is not ready yet
10:58:51 | DEBUG    | Container in http://0.0.0.0:49919 is not ready yet
10:58:52 | DEBUG    | Container in http://0.0.0.0:49919 is not ready yet
10:58:53 | DEBUG    | Container in http://0.0.0.0:49919 is not ready yet
10:58:54 | DEBUG    | Container in http://0.0.0.0:49919 is not ready yet
10:58:55 | DEBUG    | Getting APIs
10:58:55 | DEBUG    | Getting them using info endpoint
10:58:55 | DEBUG    | Using URL: http://0.0.0.0:49919/info
10:58:55 | DEBUG    | Status code: 200
10:58:55 | DEBUG    | Writing file /home/gturon/eos/repository/eos3b5e/20240930105840/apis_list.txt
10:58:55 | DEBUG    | ['run']
10:58:55 | DEBUG    | Stopping and removing container
10:58:55 | DEBUG    | Stopping all containers related to model eos3b5e
10:58:55 | DEBUG    | Stopping and removing container eos3b5e_f838
10:59:06 | DEBUG    | Container stopped
10:59:06 | DEBUG    | Container removed
10:59:06 | DEBUG    | Copying information file from model container
32e57ce61b01b4296da70955b5965b4bb4d80608ef41bde4a5725953820e3fad
Error response from daemon: Could not find the file /root/eos/dest/eos3b5e/information.json in container c90a1f8d-9310-4562-87d3-33edca84868a
c90a1f8d-9310-4562-87d3-33edca84868a
10:59:06 | ERROR    | Information file not found, not modifying anything
10:59:06 | DEBUG    | Copying api_schema_file file from model container
960bed233984e86350ef025d6f306ab281211a2962e232d914db3fef4cc1acab
Error response from daemon: Could not find the file /root/eos/dest/eos3b5e/api_schema.json in container 528612c9-8ebf-40a8-ba29-1cf3479f2aba
528612c9-8ebf-40a8-ba29-1cf3479f2aba
10:59:06 | DEBUG    | Copying status file from model container
a61b1851ac275a9111142e02f5d400190e77f57bdda943ba2e3f35154073b898
Error response from daemon: Could not find the file /root/eos/dest/eos3b5e/status.json in container afb83738-2a03-442f-9551-d42671aee848
afb83738-2a03-442f-9551-d42671aee848
b0f20f26590876c2c139bb2adc8bb2d329ba46f65608ddd4d1d0a31179d90d4d
Error response from daemon: Could not find the file /root/eos/dest/eos3b5e/model/framework/examples/input.csv in container a06d207e-6705-4705-a2bf-08ad9ad53572
a06d207e-6705-4705-a2bf-08ad9ad53572
10:59:07 | DEBUG    | Running standard CSV example
10:59:07 | DEBUG    | /home/gturon/eos/dest/eos3b5e/example_standard_input.csv
10:59:07 | DEBUG    | /home/gturon/eos/dest/eos3b5e/example_standard_output.csv
10:59:08 | DEBUG    | Usage: ersilia [OPTIONS] COMMAND [ARGS]...

  🦠 Welcome to Ersilia! 💊

Options:
  --version      Show the version and exit.
  -v, --verbose  Show logging on terminal when running commands.
  -s, --silent   Do not echo any progress message.
  --help         Show this message and exit.

Commands:
  api      Run API on a served model
  auth     Log in to ersilia to enter contributor mode.
  card     Get model info card
  catalog  List a catalog of models
  clear    Clear ersilia
  close    Close model
  current  Get identifier of current model
  delete   Delete model from local computer
  example  Generate input examples for the model of interest
  fetch    Fetch model from Ersilia Model Hub
  info     Get model information
  inspect  Inspect model
  run      Run a served model
  sample   Sample inputs and model identifiers
  serve    Serve model
  test     Test a model

10:59:08 | DEBUG    | No need to use Conda!
/home/gturon/miniconda3/envs/ersilia/lib/python3.11/site-packages/fuzzywuzzy/fuzz.py:11: UserWarning: Using slow pure-python SequenceMatcher. Install python-Levenshtein to remove this warning
  warnings.warn('Using slow pure-python SequenceMatcher. Install python-Levenshtein to remove this warning')
🚀 Serving model eos3b5e: molecular-weight

   URL: http://0.0.0.0:49155
   PID: -1
   SRV: pulled_docker

👉 To run model:
   - run

💁 Information:
   - info
/home/gturon/miniconda3/envs/ersilia/lib/python3.11/site-packages/fuzzywuzzy/fuzz.py:11: UserWarning: Using slow pure-python SequenceMatcher. Install python-Levenshtein to remove this warning
  warnings.warn('Using slow pure-python SequenceMatcher. Install python-Levenshtein to remove this warning')
10:59:25 | ERROR    | Ersilia exception class:
StandardModelExampleError

Detailed error:
Standard model run from CSV was not possible for model eos3b5e
Output file /home/gturon/eos/dest/eos3b5e/example_standard_output.csv was not created successfully

Hints:
If you fetch this model from Docker Hub, or you are running it through URL, this is the first time run is executed in your local computer. Reach out to Ersilia to get specific help.

🚨🚨🚨 Something went wrong with Ersilia 🚨🚨🚨

Error message:

Ersilia exception class:
StandardModelExampleError

Detailed error:
Standard model run from CSV was not possible for model eos3b5e
Output file /home/gturon/eos/dest/eos3b5e/example_standard_output.csv was not created successfully

Hints:
If you fetch this model from Docker Hub, or you are running it through URL, this is the first time run is executed in your local computer. Reach out to Ersilia to get specific help.

If this error message is not helpful, open an issue at:
 - https://github.com/ersilia-os/ersilia
Or feel free to reach out to us at:
 - hello[at]ersilia.io

If you haven't, try to run your command in verbose mode (-v in the CLI)
 - You will find the console log file in: /home/gturon/eos/current.log