BioModel Discussion Issue for eos42ez

ersilia-os / eos42ez

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BioModel Discussion Issue for eos42ez #5

Open Zainab-ik opened 2 months ago

Zainab-ik commented 2 months ago

Summary !!!

BioModel Name: Wong2024 - Discovery of a structural class of antibiotics with explainable deep learning
BioModel Tag: fair AIML, Machine learning model, Ersilia
Metadata Comments: This publication is the same as eos18ie, and same rule applies.
Contributor:

roles Names

Curator @Zainab-ik

Code contributor @Richiio

Reviewer @GemmaTuron
Curation status : manually curated
Annotation file: here

roles	Names
Curator	@Zainab-ik
Code contributor	@Richiio
Reviewer	@GemmaTuron

GemmaTuron commented 1 month ago

Hi @Zainab-ik What do you mean by and same rule applies.?

Zainab-ik commented 1 month ago

Hi @Zainab-ik What do you mean by and same rule applies.?

I meant using the same Metadata while changing the theme and output of the model. For example, for this model, the cell lines would be replaced with the initial organism in the metadata and the output changes also.

GemmaTuron commented 1 month ago

ah ok, yes that means sense

Zainab-ik commented 1 month ago

This model is about cytotoxic endpoint, I don't think active and inactive fits the scope of the model.

GemmaTuron commented 1 month ago

As we just discussed, let's use Active and Inactive as outputs of the assay, but not Toxicity, and the model is good to go