ersilia-os / eos4cxk

GNU General Public License v3.0
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New model ready for testing! #4

Closed github-actions[bot] closed 1 year ago

github-actions[bot] commented 1 year ago

This model is ready for testing. If you are assigned to this issue, please try it out using the CLI, Google Colab and DockerHub and let us know if it works!

HellenNamulinda commented 1 year ago

Hi @GemmaTuron and @emmakodes, The model works well using Colab, CLI and Docker. Test file: eml_50.csv

Colab Output: eos4cxk_colab_output.csv

CLI: 4cxk_cli_output.csv

(ersilia) hellenah@hellenah-elitebook:~$ ersilia serve eos4cxk
πŸš€ Serving model eos4cxk: sars-cov-2-antiviral-screen

   URL: http://0.0.0.0:53801
   PID: -1
   SRV: pulled_docker

πŸ‘‰ To run model:
   - run

πŸ’ Information:
   - info
(ersilia) hellenah@hellenah-elitebook:~$ ersilia -v run -i ~/eml_50.csv -o 4cxk_cli_output.csv > 4cxk_cli_predict.log 2>&1 
(ersilia) hellenah@hellenah-elitebook:~$ ersilia run -i "Nc1nc(NC2CC2)c3ncn([C@@H]4C[C@H](CO)C=C4)c3n1"
{
    "input": {
        "key": "MCGSCOLBFJQGHM-SCZZXKLOSA-N",
        "input": "Nc1nc(NC2CC2)c3ncn([C@@H]4C[C@H](CO)C=C4)c3n1",
        "text": "Nc1nc(NC2CC2)c3ncn([C@@H]4C[C@H](CO)C=C4)c3n1"
    },
    "output": {
        "outcome": [
            0.0,
            0.0,
            0.0,
            0.0,
            1.0,
            0.0,
            0.0,
            1.0,
            1.0,
            0.0,
            0.0,
            0.0,
            0.0
        ]
    }
}

Docker: 4cxk_docker_output.csv

hellenah@hellenah-elitebook:~$ docker run -v /home/hellenah:/data ersiliaos/eos4cxk
+ [ -z eos4cxk ]
+ ersilia serve -p 3000 eos4cxk
πŸš€ Serving model eos4cxk: sars-cov-2-antiviral-screen

   URL: http://127.0.0.1:3000
   PID: 37
   SRV: conda

πŸ‘‰ To run model:
   - run

πŸ’ Information:
   - info
Serving model eos4cxk...
+ echo Serving model eos4cxk...

hellenah@hellenah-elitebook:~$ docker ps
CONTAINER ID   IMAGE               COMMAND                  CREATED          STATUS          PORTS     NAMES
0b0d63a0d6e8   ersiliaos/eos4cxk   "sh /root/docker-ent…"   19 minutes ago   Up 19 minutes   80/tcp    distracted_dewdney
hellenah@hellenah-elitebook:~$ docker exec -it 0b0d63a0d6e8 /bin/bash 
root@0b0d63a0d6e8:~# ersilia -v run -i /data/eml_50.csv -o /data/4cxk_docker_output.csv > /data/4cxk_docker_predict.log 2>&1
root@0b0d63a0d6e8:~# ersilia run -i "Nc1nc(NC2CC2)c3ncn([C@@H]4C[C@H](CO)C=C4)c3n1"
{
    "input": {
        "key": "MCGSCOLBFJQGHM-SCZZXKLOSA-N",
        "input": "Nc1nc(NC2CC2)c3ncn([C@@H]4C[C@H](CO)C=C4)c3n1",
        "text": "Nc1nc(NC2CC2)c3ncn([C@@H]4C[C@H](CO)C=C4)c3n1"
    },
    "output": {
        "outcome": [
            0.0,
            0.0,
            0.0,
            0.0,
            1.0,
            0.0,
            0.0,
            1.0,
            1.0,
            0.0,
            0.0,
            0.0,
            0.0
        ]
    }
}