BioModel Discussion Issue for eos80ch

[Zainab-ik]

Here is the discussion issue template.

Below is a sample specific to eos80ch

• BioModel Name: van-Heerden2023, Chemical Features Identification for Stage-Specific Antimalarial Compounds
• BioModel Tag: fair AIML
• Metadata Information: These are the metadata extracted from the paper

Ontologies	Metadata
Ontology for Parasite Lifecycle OPL	asexual lifecycle in host red blood cell stage
Experimental Factor Ontology EFO	Malaria

• Contributor:

roles	Names
Curator	@Zainab-ik
Code contributor	@GemmaTuron
Reviewer	@GemmaTuron

• Curation status : manually curated

• Annotation file: eos80ch

• BioModel Upload: https://www.ebi.ac.uk/biomodels/MODEL2403270002

[Zainab-ik]

The annotation for this model is complete and after review would be uploaded to BioModels tomorrow.

[GemmaTuron]

Hi @Zainab-ik

This looks good, might I ask why there is so few ontologies when in the .csv there are many more? I understand it can be annoying to copy everything from the .csv to the issue, which I do not think is necessary. My suggestion would be:

• In the metadata annotation, use the field to summarise your findings and ask any questions, note down any points for discussion. For example: I am not sure if this model is related to the sexual or asexual cycle of the parasite
• In the .csv file: I'd prefer a link to the .csv file in our Drive, so I don't have to download it and can check directly online if that sounds good?
• About the tags: is there a place where I can look for all the tags? Fair ML looks good, but are there other more specific tags, or not?

Let me know your thoughts on those, and also if you have any specific doubt about eos80ch before we approve it!

[Zainab-ik]

Hi @GemmaTuron

Thank you. Yes, I just copied a few as sample since there's the annotation file.

• Noted for the metadata annotation. I'd implement that for the rest of the model if that sounds good.
• CSV link changed to the one in the drive.
• For the tags, I've made enquiry. There's just 2 tags used for ML models which are FAIR AIML and machine learning models. I'd get back regarding this when i get a response.

Foe eos80ch, I do not have any specific doubt. I've cleared it all with @miquelduranfrigola

[Zainab-ik]

I'm having a difficulty uploading the file to the drive as a google sheet file. I opened with google sheet, download as a CSV, and upload to the drive as a CSV. However, it's still showing as a CSV file on the drive rather than a google sheet file.

[GemmaTuron]

Hi @Zainab-ik

Yes, google drive is a bit particular - once you open a file as a google sheet, you always need to use that. Only download it when it is ready as a .csv file, as if you re-upload it, you will have to convert it again. So, I suggest instead of downloading it, just pasting the link to the google sheet here, as it will then always redirect to the file which can be dynamically updated

[Zainab-ik]

Hi @GemmaTuron

I think this is good, right?