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ersilia-os / eos9ei3

Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions
GNU General Public License v3.0
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[ALERT]: V2 build failed for this model, the model has been built with v1 approach #9

Closed github-actions[bot] closed 1 week ago

github-actions[bot] commented 4 months ago

This model failed to build with v2 image. Please investigate and fix the issue.

GemmaTuron commented 2 months ago

Hi @DhanshreeA

I do not know if this is related to the versions but with the latest Ersilia code I am unable to fetch and run this model:

Detailed error:
Standard model run from CSV was not possible for model eos9ei3
Output file /home/gturon/eos/dest/eos9ei3/example_standard_output.csv was not created successfully

Hints:
If you fetch this model from Docker Hub, or you are running it through URL, this is the first time run is executed in your local computer. Reach out to Ersilia to get specific help.

🚨🚨🚨 Something went wrong with Ersilia 🚨🚨🚨

Error message:

Ersilia exception class:
StandardModelExampleError

Detailed error:
Standard model run from CSV was not possible for model eos9ei3
Output file /home/gturon/eos/dest/eos9ei3/example_standard_output.csv was not created successfully

Hints:
If you fetch this model from Docker Hub, or you are running it through URL, this is the first time run is executed in your local computer. Reach out to Ersilia to get specific help.
DhanshreeA commented 2 months ago

Hi @GemmaTuron I tried fetching this model and it works for me. I will try to debug why it isn't working on your machine, for that I need 3 pieces of information from you:

  1. How did you fetch this model? Through source (--from_github, or --repo_path), or via dockerhub by either explicitly specifying that or through using ersilia fetch without any flags?
  2. Could you share the entire stack trace when you fetch this model in verbose mode?
  3. Could you share the commit sha/commit message on the ersilia master branch that you are currently running in your virtualenv/conda env?
GemmaTuron commented 2 months ago

Hi @DhanshreeA I can fetch it from github but not from Docker

DhanshreeA commented 2 months ago

@GemmaTuron okay, that helps. I was able to fetch it from Docker, so now I will to need information from points 2 and 3 from you.

GemmaTuron commented 1 month ago

Hi @DhanshreeA

This is the output when fetching eos9ei3.txt

I am running the latest version of ersilia (fetched this morning, July 23rd)

GemmaTuron commented 2 weeks ago

Hello @DhanshreeA

This error still persists and I did not see any further updates. I need to use this model for several of our projects and also in the upcoming workshop. This is what happens when I try to fetch it from Docker in my machine:

🚨🚨🚨 Something went wrong with Ersilia 🚨🚨🚨

Error message:

Ersilia exception class:
StandardModelExampleError

Detailed error:
Standard model run from CSV was not possible for model eos9ei3
Output file /home/gturon/eos/dest/eos9ei3/example_standard_output.csv was not created successfully

Hints:
If you fetch this model from Docker Hub, or you are running it through URL, this is the first time run is executed in your local computer. Reach out to Ersilia to get specific help.

If this error message is not helpful, open an issue at:
 - https://github.com/ersilia-os/ersilia
Or feel free to reach out to us at:
 - hello[at]ersilia.io

If you haven't, try to run your command in verbose mode (-v in the CLI)
 - You will find the console log file in: /home/gturon/eos/current.log

The full error is copied in the previous message. Other models work just fine so it must be an issue with this particular model.

GemmaTuron commented 1 week ago

We can now close this. The above issue has been solved - seemed due to a synch problem in my Docker Desktop with the online version of this model