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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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🐛 Bug: "Something is wrong with Ersilia: EmptyOutputError" #1074

Closed manyajsingh closed 6 months ago

manyajsingh commented 6 months ago

Describe the bug.

When I tried fetching the model eos46ev, after a few minutes, it displayed the following on my terminal:

🚨🚨🚨 Something went wrong with Ersilia 🚨🚨🚨

Error message:

Ersilia exception class: EmptyOutputError

Detailed error: Model API eos46ev:run did not produce an outputTraceback (most recent call last): File "/home/manyasachdeva/eos/repository/eos46ev/20240315123850_60AC92/eos46ev/artifacts/framework/code/main.py", line 10, in from PyBioMed.PyMolecule import fingerprint ModuleNotFoundError: No module named 'PyBioMed'

Hints:

Describe the steps to reproduce the behavior

  1. On your wsl terminal, type: conda activate ersilia

  2. It should show (ersilia) instead of (base). Once you are in ersilia, type: cd ersilia

  3. Now to fetch the model, type ersilia fetch eos46ev

Expected behavior.

Model API eos46ev is supposed to produce an output traceback and not raise an error. There is no module named PyBioMed and this is raising ModuleNotFoundError Please fix this! And if I am missing some command/ installation procedure, please let me know!

Screenshots.

No response

Operating environment

I am using WSL (Ubuntu) 23.10

Additional context

No response

DhanshreeA commented 6 months ago

Hi @manyajsingh can you check the environment of the model and list the dependencies in there?

manyajsingh commented 6 months ago

Hi @DhanshreeA Where shall I refer it from? This is the github repo link for the model: https://github.com/ersilia-os/eos46ev

GemmaTuron commented 6 months ago

Hello @manyajsingh,

If this is related to the Outreachy contribution period please, explain the erorrs / issues you are encountering in your issue, do not open a bug report - this will help the community managers follow the Outreachy applications better. @DhanshreeA please feel free to close this comment and move the conversation to the appropriate issue

manyajsingh commented 6 months ago

Alright @GemmaTuron and @DhanshreeA , thank you for your patience and help I will let you know in case I encounter more issues along the way