Outreachy Documentation Project: <adeola-dev>

[adeola-dev]

Applicant:

Welcome to the Ersilia Open Source Initiative. This issue will serve to track all your contributions for the project “Improve the documentation and outreach material of the Ersilia Model Hub”.

Please tick the tasks as you complete them. To make a final application it is not required to have completed all tasks. Only the Initial Steps and Community sections are REQUIRED. The tasks are not ordered from more to less important, they are simply related to different skills. Start where you feel most comfortable. This project can be adapted to the applicants interests, please focus on the type of tasks that you prefer / have better skills / would like to work on as an intern.

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Initial steps:

• [x] Record your application for the project in the outreachy website referencing this issue. Please make sure to select the right project on the website.
• [x] Join the Slack channel to follow public communications

• [x] Comment under this issue explaining why are you interested in this project

  GitHub documentation:

• [x] Create a README file with the name under the /documentation folder
• [x] Link the #PR in a comment under this issue

• [x] Incorporate feedback from the mentor

  Writing dissemination material

• [x] Read the Strategic plan 2021-2023 for Ersilia and create a 1-page blogpost with the main points
• [x] Comment under this issue with a link to the blogpost (a google docs for example)
• [x] Incorporate feedback from the mentor
• [ ] Choose your own topic related to Ersilia (AI/ML for biomedical research, neglected diseases, drug discovery…) and write a 1-page blogpost to communicate to a non-expert audience
• [ ] Comment under this issue with a link to the blogpost (a google docs for example)
• [ ] Incorporate feedback from the mentor
• [ ] Create a template for a twitter post to release every time a new model is incorporated in the Hub (twitter: 280 characters, you can suggest a main post + thread with extra information) and add it as a comment under this issue

• [ ] Create a template short Newsletter (1 paragraph) to send every month to our community (funders, users, contributors). It should mention metrics (models in the hub, number of users, funding…), thank you etc

  Technical skills (required for the tutorial only)

• [x] Install the Ersilia Model Hub
• [ ] Test one model
• [ ] Add a screenshot under this issue showing the model running in your computer

• [ ] Write a docstring for the ErsiliaModel class. Use the Google Python Style guide. Paste the docstring as a comment below (do not use a PR).

  Graphic material

• [x] Read the Ersilia Brand Guidelines
• [x] Read “Why Ersilia?”
• [x] Create one image / slide to explain Ersilia’s mission and vision
• [x] Link to the image/slide as a comment under this issue
• [x] Incorporate feedback from the mentor
• [ ] Create two slides / short video showing how to use the Ersilia Model Hub and add them under the /tutorial folder
• [ ] Link the #PR in this issue

• [ ] Incorporate feedback from the mentor

  Scientific content

• [x] Check the models available in the Hub
• [ ] Select one model from the list and write a technical card (what is the model for, what input, which data was used to create it, what kind of ML algorithm uses…) for it
• [ ] Add your card as a comment to this issue

• [ ] Search the scientific literature and suggest 3 new models (comment in this issue) that would be relevant to incorporate in the Hub.

  Community

• [x] Look up two other projects and comment on their issues with feedback on one of their tasks

• [x] If you have feedback from your peers, answer it in this issue.

  Other

  If you have interest in working on related topics, or have new suggestions, please do the following

• [ ] Add a comment in this issue with your new idea, tagging the mentor
• [ ] Get feedback from the mentor and act accordingly

• [ ] Link in the comments any other PR you have contributed to.

  Final application

• [x] I have answered all comments from mentors and contributors
• [ ] All PR or issues assigned to me are complete
• [x] I have submitted my final application to the project

[adeola-dev]

The issue of neglected tropical diseases has been a terrible menace in terms of treatment and surveillance especially here in Nigeria. Ersilia's AI/ML models, bring us just enough predictions to tackle these problems. I am interested in this project because I want to be a part of the reason that humans are a step closer to tackling the plague of illnesses we once had no cure for, which is one of the main aims of Ersilia.

[GemmaTuron]

Hi @adeola-dev

Have you succeeded in installing the hub? f so, paste a screenshot showing a model running and tackle any of the next tasks! Many thanks

[adeola-dev]

Hello @GemmaTuron, I have successfully installed the hub but I keep getting this error when I try to install the model

[adeola-dev]

Hello @GemmaTuron, here is the linked PR to the readme file I created #137

[GemmaTuron]

Hi @adeola-dev

You will see I reverted your pull request since the file was not created in the /documentation folder. Can you re-do this and make sure it is in the right place?

Thanks

[adeola-dev]

Hi @GemmaTuron, I have created the readme file in the /documentation folder. Here is the linked pull request #173

[GemmaTuron]

Hi @adeola-dev ,

thanks, two comments only!

• Revise the LICENSE file associated to this repo, the original readme file is not right
• Thanks for giving credit to us but this is a community project no need to add our pictures there :)

[adeola-dev]

Hello @GemmaTuron, I fixed this at #200. Thanks..

[adeola-dev]

Hello @GemmaTuron, here is the link to the one-page blog post on Ersilia strategic plan I created https://docs.google.com/document/d/1Xmxyr1hEvHGsxoJa2eTt6kD-Ne8DF-S9a8sjBoGgmEo/edit?usp=sharing Your review is highly appreciated.

[adeola-dev]

Hi @GemmaTuron, below is the link to the Ersilia mission and vision graphics I created. https://docs.google.com/document/d/1KL5M0_p7dzZtOtxS2aeXdo5pVYqvLpXCb4C_Nq8ossU/edit?usp=sharing Your suggestions and recommendations will be highly appreciated.

[GemmaTuron]

Hi @adeola-dev

Great job on the graphics, I really like them! The infographic with our strategic goals is a great way of displaying this info. Could you work on that infographic to make it a single image with:

• Ersilia logo (either the grid alone or grid+name)
• Color coding from our brands It would be great for our communications. When you finish this I think you are ready to prepare your final application on the outreachy website!

[loweyvana]

Hi @GemmaTuron, below is the link to the Ersilia mission and vision graphics I created. https://docs.google.com/document/d/1KL5M0_p7dzZtOtxS2aeXdo5pVYqvLpXCb4C_Nq8ossU/edit?usp=sharing Your suggestions and recommendations will be highly appreciated.

Wow! Your graphic is so beautiful. Well done @adeola-dev

[adeola-dev]

Hi @adeola-dev

Great job on the graphics, I really like them! The infographic with our strategic goals is a great way of displaying this info. Could you work on that infographic to make it a single image with:

• Ersilia logo (either the grid alone or grid+name)
• Color coding from our brands It would be great for our communications. When you finish this I think you are ready to prepare your final application on the outreachy website!

Thanks for the clarification @GemmaTuron Here is the updated version https://docs.google.com/document/d/1AV4hfU8XcRX9V-ch6E1a8iHp6KrXmu67vPsUbvCuKuM/edit?usp=sharing

[adeola-dev]

Hi @GemmaTuron, below is the link to the Ersilia mission and vision graphics I created. https://docs.google.com/document/d/1KL5M0_p7dzZtOtxS2aeXdo5pVYqvLpXCb4C_Nq8ossU/edit?usp=sharing Your suggestions and recommendations will be highly appreciated.

Wow! Your graphic is so beautiful. Well done @adeola-dev

Thank you @loweyvana!

[GemmaTuron]

Hi @adeola-dev

Thanks for the changes! Now focus on your final application please!

[adeola-dev]

Thanks again for all your support!