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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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Bug 🐛: Version conflicts while installing Ersilia #269

Closed Amna-28 closed 2 years ago

Amna-28 commented 2 years ago

Describe the bug.

I am working on Linux-Ubuntu 64-bit. While Installing Ersilia, I encountered two dependency-related conflicts:

  1. ersilia and isaura require different versions of h5py and loguru. I get the following error: isaura 0.0.1 requires h5py==3.4.0, but you have h5py 3.7.0 which is incompatible. isaura 0.0.1 requires loguru==0.5.3, but you have loguru 0.6.0 which is incompatible.

  2. Bentoml and sqlalchemy: bentoml 0.11.0 requires sqlalchemy<1.4.0,>=1.3.0, but you have sqlalchemy 1.4.36 which is incompatible.

Describe the steps to reproduce the behavior

  1. Install Anaconda, Docker, Git and Git-lfs
  2. Create Anaconda environment with python version 3.7: conda create -n ersilia python=3.7
  3. Activate the environment and install ersilia: conda activate ersilia git clone https://github.com/ersilia-os/ersilia.git cd ersilia pip install -e .
  4. Install isaura: git clone https://github.com/ersilia-os/isaura.git cd isaura
    pip install -e .

Expected behavior.

No response

Screenshots.

image image

Operating environment

Ubuntu 20.04.3

Additional context

No response

miquelduranfrigola commented 2 years ago

This has been resolved. Thanks @Amna-28 !