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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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🐛 Bug: EmptyOutputError for Model eos157v #295

Closed Malikbadmus closed 1 year ago

Malikbadmus commented 1 year ago

Describe the bug.

Model API eos157v: predict did not produce an output.

The above is the error message gotten while trying to fetch eos157v.

Commands were run in verbose mode(-v in the CLI)

Describe the steps to reproduce the behavior

ersilia -v fetch eos157v

Expected behavior.

Fetch the model successfully

Screenshots.

No response

Operating environment

Ubuntu 22.04.1

Additional context

No response

GemmaTuron commented 1 year ago

Hi @Malikbadmus ! Thanks, if you can paste the whole error log that will be helpful! I am also linking here @Amna-28 , I think you incorporated this model, any issues we should we aware of? Thanks both!

risper25 commented 1 year ago

Hello , @GemmaTuron and @Malikbadmus ,Am also getting the same error on model eos2r5a.

Malikbadmus commented 1 year ago

Hi, @risper25 can you fetch the model again, I've been able to successfully run the model. @GemmaTuron, I ran through the whole model again and it was successful this time around, I have dropped the output file into the shared folder.

GemmaTuron commented 1 year ago

thanks @Malikbadmus for the update! I also wanted to check that you have GitLFS installed @risper25, as the error if not at this moment is not very informative (see #277)

Amna-28 commented 1 year ago

Hi @Malikbadmus ! Thanks, if you can paste the whole error log that will be helpful! I am also linking here @Amna-28 , I think you incorporated this model, any issues we should we aware of? Thanks both!

Hi @GemmaTuron , Thanks for letting me know. It was happening because of issue #292 which has been resolved. Reinstalling Ersilia will fix this problem

risper25 commented 1 year ago

Thanks, @Malikbadmus and @GemmaTuron, I have the GitFS installed, I tried to fetch the model but while fetching I encouter this error TypeError: expected str, bytes, or os.PathLike object, not NoneType #297.

GemmaTuron commented 1 year ago

Hi @risper25

Can you:

risper25 commented 1 year ago

hi @GemmaTuron, I reinstalled my docker and managed to fetch the model. Thanks...

GemmaTuron commented 1 year ago

Fantastic, thanks @risper25 I'll close this issue then