ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
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🐛 Bug: Empty output error while fetching eos4tcc #357

Closed UChisom closed 2 years ago

UChisom commented 2 years ago

Describe the bug.

The model eos4tcc raised an Emtpy output error while I tried to fetch it. In the log file, it ran into a CONDAHTTPERROR from which the program continued to download packages and fetch the model. Eventually it produced an Empty output error

Describe the steps to reproduce the behavior

Expected behavior.

Successfully fetched model

Screenshots.

eos4tcc error.pdf

Operating environment

Ubuntu 22.04.1 LTS

Additional context

I successfully ran the dummy model and another test model already. I have git lfs installed as well.

UChisom commented 2 years ago

@GemmaTuron please see issue

GemmaTuron commented 2 years ago

Hi @UChisom

If you look at your error log, you will see the following message: CondaHTTPError: HTTP 000 CONNECTION FAILED for url https://conda.anaconda.org/pytorch/linux-64/pytorch-1.12.0-py3.7_cuda11.3_cudnn8.3.2_0.tar. bz2 Elapsed: - An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way.

This means your internet connection likely dropped while fetching. Specially if other models work that must have been the problem. If you think your internet connection is unstable and will make it difficult to work on the Ersilia CLI let me know so we can find a workaround, but maybe try fetching this model once more.

GemmaTuron commented 2 years ago

What might work for you @UChisom is try and increase the buffer or download sizes, see https://stdworkflow.com/877/error-rpc-failed-curl-56-gnutls-recv-error-54-error-in-the-pull-function

Femme-js commented 2 years ago

Hi @UChisom !

This is the same error that I ran into with two of my models.

338

GemmaTuron commented 2 years ago

Hi @Femme-js , Actually if you look at the error logs on #338 I don't see the same messages, so this is not the same error I think...

UChisom commented 2 years ago

Thanks @GemmaTuron I'll work on the solutions you've linked and get back to you.

I'll fetch them once more, and I'm really hopeful for any workaround to strengthen my internet stability 😊

We could continue on this thread

GemmaTuron commented 2 years ago

Hi @UChisom try and do some reading on the internet as there are a few solutions proposed such as increasing buffer size. In parallel, test the models in Colab which won't be restricted by your internet ;)

UChisom commented 2 years ago

Okay, will do thanks

UChisom commented 2 years ago

Hi @GemmaTuron I have now tested the model and opened the associated issues in #372 .

They still didn't work out

GemmaTuron commented 2 years ago

Hi @UChisom I am closing this error as this is originally related to connectivity issues. Let's continue the conversation on the open issues!