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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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🐛 Bug: Error while cloning Ersilia from Github (ERROR: No matching distribution found for bentoml==0.11.0) #358

Closed Balofire closed 1 year ago

Balofire commented 2 years ago

Describe the bug.

After satisfying all the pre-requisites for the installation of the Ersilia Tool and cloning it from Github using git clone https://github.com/ersilia-os/ersilia.git, I ran into the errors; "ERROR: Could not find a version that satisfies the requirement bentoml==0.11.0 (from ersilia) (from versions: none)" and "ERROR: No matching distribution found for bentoml==0.11.0", when running pip install -e . .

Describe the steps to reproduce the behavior

  1. Create conda environment using conda create -n ersilia python=3.7
  2. Activate the environment using conda activate ersilia
  3. Clone the Ersilia Python Package from Github using git clone https://github.com/ersilia-os/ersilia.git cd ersilia
  4. Install with pip, pip install -e .

Expected behavior.

I expected the package to install successfully so I could check with ersilia --help and the dummy test model eos3b5e.

Screenshots.

Screenshot (3)

Operating environment

Ubuntu 20.04.5 LTS

Additional context

This was all after I had succesfully installed the tool and had run into an error while trying to execute the dummy test model eos3b5e. I followed the installation steps again in a bid to correct that previous issue and now I'm battling with the one above.

GemmaTuron commented 2 years ago

Hello @Balofire If you check the error explanation you see this is related to an internet connection, not to ersilia. Could be due to a vpn or proxy you are using? Also you can try to increase the buffer or download size https://stdworkflow.com/877/error-rpc-failed-curl-56-gnutls-recv-error-54-error-in-the-pull-function

@Zaniab-ik is experiencing similar issues #352

Zainab-ik commented 2 years ago

@Balofire check your network settings and check out this article Here

ZakiaYahya commented 2 years ago

@Balofire i've encountered the same problem while installing ersilia model. I did these steps and i got rid of these error, plz follow theses steps and check whether it's working for you or not, do this inside the ersilia environment, sudo apt-get update sudo apt-get upgrade sudo apt install python3-pip pip3 --version after that deactivate the ersilia conda environment & rerun the terminal. I hope this works for u too.

GemmaTuron commented 1 year ago

This is a system issue and not related to Ersilia. I'll close this issue