ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
220 stars 147 forks source link

Show Installation and Run of the Ersilia Model Hub - Outreachy #36

Closed GemmaTuron closed 2 years ago

GemmaTuron commented 2 years ago

This issue is for Outreachy Applicants interested in contributing to the Project "Improve the Ersilia Model Hub, a FOSS platform offering pre trained AI/ML models for research"

Before tackling any coding issue, comment here with:

This is required before we accept any pull request for the issues labelled with the tag "code"

Riyabelle25 commented 2 years ago
GemmaTuron commented 2 years ago
  • Hi, I'm Riya Elizabeth John a third-year B.E undergrad at IIT Roorkee, India
  • System (OS, Windows., Linux) and version: MacOS Monterey Version 12.1, Apple M1 chip
  • Your background in Python (required skill for this project): I'm primarily a Python Developer with (both open-source and industrial) experience working in ML Toolboxes/Packages. As part of the Vision and Language Group here at my university, I also have a sound knowledge of Deep-learning models and Machine-learning algorithms. In short, I really love working on software platforms that intersect with the ML domain.
  • A snapshot of your CLI showing that you have successfully run a model:
Screenshot 2022-03-28 at 1 09 30 PM

Hello @Riyabelle25, Many thanks for answering! Next step would be to pick one of the issues with the label "code" to start working on it. @miquelduranfrigola will be your mentor for that, ping him in the issue of your interest and it will be assigned to you. You can already record this issue in the Outreachy Website to start your application for this project.

Please note that we are updating the GitHub workflows for contributors and this might take a few days to be up and running, so you will not be able to push the work just yet, work on your branch in the meantime

Riyabelle25 commented 2 years ago

Aight, will do 💛

qxprakash commented 2 years ago
Rufaida98 commented 2 years ago

Capture ercilia i installed succefully but i coudnt run the model. Can anyone help me ?

Riyabelle25 commented 2 years ago

Capture ercilia i installed succefully but i coudnt run the model. Can anyone help me ?

Could you specify your OS setup, and reproduce your steps?

Rufaida98 commented 2 years ago

Os I did the steps again in anaconda power shell and gave me the same result

anamika-yadav99 commented 2 years ago

Hi @Rufaida98 it's recommended to run it on linux or MacOs. You can install it on your WSL and then run the same commands in ubuntu terminal.

Rufaida98 commented 2 years ago

hi @anamika-yadav99 yes i am trying installing wsl right now. wish me luck :)

1218muskan commented 2 years ago
Rufaida98 commented 2 years ago

@1218muskan i have windows 10 and i installed ubuntu but i faced a problem c ubuntu Can you tell me hoe you run the program successfully?

anamika-yadav99 commented 2 years ago

@1218muskan i have windows 10 and i installed ubuntu but i faced a problem c ubuntu Can you tell me hoe you run the program successfully?

you can follow this tutorial : https://www.minitool.com/news/enable-virtualization-windows-10.html to enable virtualization in your system

anamika-yadav99 commented 2 years ago

Hi, I'm Anamika. I'm 3rd year undergraduate from India. System (OS, Windows., Linux) and version: Windows 10. Using WSL (Ubuntu 18.04) Your background in Python (required skill for this project): I'm a Python Developer with open source experience working in ML, bioinformatics, ML toolboxes/packages . I'm a student researcher working in application of ML algorithms in solving complex problems in biotechnology. A snapshot of your CLI showing that you have successfully run a model: image

ps-19 commented 2 years ago

@1218muskan i have windows 10 and i installed ubuntu but i faced a problem c ubuntu Can you tell me hoe you run the program successfully?

You need to enable virtualisation in you PC to use window subsystem with ubuntu.

ps-19 commented 2 years ago

Capture ercilia i installed succefully but i coudnt run the model. Can anyone help me ?

Could you specify your OS setup, and reproduce your steps?

Its windows 10 i guess.

Rufaida98 commented 2 years ago

i installed ubuntu and did all the steps right but still the same problem arises

prtk2001 commented 2 years ago
Hi, I'm Prateek Singh, I'm 3rd year undergraduate from India
System (OS, Windows., Linux) and version: Ubuntu 20.4 on VMware
Your background in Python (required skill for this project):Being a machine learning engineer, I'm pretty familiar with python. I have great experience in tensor flow and a rookie in AWS
A snapshot of your CLI showing that you have successfully run a model:

ersilia

ps-19 commented 2 years ago

@Rufaida98 can you please attach a screenshot of installation error.

ps-19 commented 2 years ago

or copy paste the issue.

Rufaida98 commented 2 years ago

@ps-19 it is as same as above. It came always after I try code "pip install - e." or if i succeeded with that it does not let do the last step which is "ercilia - - help".

dauinh commented 2 years ago

Hi @GemmaTuron

Amna-28 commented 2 years ago

image

Rufaida98 commented 2 years ago

Finally everything works for me.Thank you for everyone who reached to me

Rufaida98 commented 2 years ago

My name is Rufaida Ali Windows 10 with Ubunto 18.04 I am so passionate about ML and AI and aspiring to be a data scientist.I am currently learning python and reached intermediate level.build some game projects Capture ersilia

Amna-28 commented 2 years ago

Hi @miquelduranfrigola @gemmaturon ! I have completed the installation and have run the model. I was going through the issues but it seems like every issue related to code has been assigned. Can you please suggest any issue that I could work on? I really want to contribute to this project. Thank you.

miquelduranfrigola commented 2 years ago

Hi @miquelduranfrigola @GemmaTuron ! I have completed the installation and have run the model. I was going through the issues but it seems like every issue related to code has been assigned. Can you please suggest any issue that I could work on? I really want to contribute to this project. Thank you.

Thanks @Amna-28! I am now reviewing issues, will update you soon.

sonali-sk commented 2 years ago

Hi @GemmaTuron,

  • I am Sonali S K
  • System (OS, Windows., Linux) and version: Windows 10, WSL with Ubuntu 20.04 LTS
  • Your background in Python (required skill for this project): In 2020, I had taken 'Python for Data Science and AI' course by IBM. Since then, Python has been my preferred language to code, and I've used the same in several coding competitions. I have explored most of the data structures and am familiar with libraries such as numpy, pandas, matplotlib etc.
  • A snapshot of your CLI showing that you have successfully run a model RunSuccess
mahamtariq58 commented 2 years ago

Hi @GemmaTuron @miquelduranfrigola !

suryaremanan commented 2 years ago

Hi @GemmaTuron and @miquelduranfrigola, I would like to contribute to the coding project.

suryaremanan commented 2 years ago

@GemmaTuron and @miquelduranfrigola kindly assign me an issue to work upon. Thanks in advance.

GemmaTuron commented 2 years ago

Hello all,

In an effort to improve tracking each applicant work, we have reformatted the contribution schema. Please head over to github and follow the instructions! I will close this issue here to avoid duplicating instructions. Thanks!