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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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🐛 Bug: Model eos9f6t not Fetching: "Something went wrong with Ersilia..." #361

Closed Jona-Bvunza closed 2 years ago

Jona-Bvunza commented 2 years ago

Describe the bug.

Find the attached log file 9f6t.log

Describe the steps to reproduce the behavior

Ran "ersilia -v fetch eos9f6t", and after 2hrs + reported "Something went wrong with Ersilia... EmptyOutputError Error message: Model API eos9f6t:predict did not produce an output" Ran "ersilia -v serve eos9f6t " command, gave a "model not fetched " and requested to fetch.... Find attached log file

Expected behavior.

No response

Screenshots.

No response

Operating environment

Ubuntu 22.04 LTS

Additional context

No response

GemmaTuron commented 2 years ago

Hello @Jona-Bvunza

This seems to be an internet connection, check the error in your log file on line 1198 pip._vendor.urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='files.pythonhosted.org', port=443): Read timed out.

A quick search popped some possible solutions: https://stackoverflow.com/questions/43298872/how-to-solve-readtimeouterror-httpsconnectionpoolhost-pypi-python-org-port

GemmaTuron commented 2 years ago

Also, seeing issue #360 , first make sure git-lfs is working and then try this model again as well

Jona-Bvunza commented 2 years ago

Thanks, @GemmaTuron. I was able to solve the issue by installing git-lfs using conda install -c conda-forge git-lfs . The model was fetched successfully and ran predictions for the test smiles.