🐛 Bug: eos3xip - EmptyOutputError

ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.

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🐛 Bug: eos3xip - EmptyOutputError #364

Closed Hauwarh closed 1 year ago

Hauwarh commented 1 year ago

Describe the bug.

I ran into this error while trying to fetch model eos3xip The log file is below eos3xip.log

Describe the steps to reproduce the behavior

No response

Expected behavior.

No response

Screenshots.

No response

Operating environment

WSL Ubuntu 22,04 LTS

Additional context

No response

GemmaTuron commented 1 year ago

Thanks @Hauwarh !

Can you please add:

What conda distribution are you using
What python
What pip version And if you collected the error log with |tee, please do it again without the|tee -a(save it directly), as I think it is hiding part of the log. I am adding here the successful log file I got on my Linux to compare. eos3xip.log

Hauwarh commented 1 year ago

Thank you @GemmaTuron

Im usiing miniconda and the version conda 22.9.0
The python version in the WSL is python 3.9 while the python version in the ersilia env is python 3.7
The pip version in the WSL is pip 21.2.4 while the pip version in the ersilia env is pip 22.2.2

GemmaTuron commented 1 year ago

Hi @Hauwarh

Your log file seems like it's missing some information (you can use mine to compare) I see an error in line 38 on your file (please, do have a look and try to understand what goes on on your log files). Have you used the |tee comand to get the file? If so, please do it again without the |tee command

Hauwarh commented 1 year ago

I tried running it without the |tee command. Right now there is nothing in my log file and it's been that way for hours.

GemmaTuron commented 1 year ago

Ok thanks @Hauwarh !

Let's try to run it in Google Colab and see if you get the same error, paste a link to the colab notebook here ;) And change the issue title adding the name of the model at the beginning please so I don't get lost

Hauwarh commented 1 year ago

Okay. Thank you!

On Wed, Oct 19, 2022, 6:21 PM gemmaturon @.***> wrote:

Ok thanks @Hauwarh https://github.com/Hauwarh !

Let's try to run it in Google Colab and see if you get the same error, paste a link to the colab notebook here ;) And change the issue title adding the name of the model at the beginning please so I don't get lost

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GemmaTuron commented 1 year ago

I'll close this issue due to inactivity